Variant report

Variant	rs907383
Chromosome Location	chr15:77870646-77870647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77864365..77867025-chr15:77869640..77872108,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1007537	0.82[JPT][hapmap]
rs1055691	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1058129	0.82[JPT][hapmap]
rs11635226	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11635634	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11636231	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12902072	0.81[CEU][hapmap]
rs12904823	0.80[CEU][hapmap]
rs12913005	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12914932	0.81[CEU][hapmap]
rs2516302	0.84[AMR][1000 genomes]
rs2667764	0.82[AMR][1000 genomes]
rs2667767	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2667775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2667781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2667782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2667783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2682910	0.82[AMR][1000 genomes]
rs2682921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2682922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2682924	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2682927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55883527	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7162113	0.84[JPT][hapmap]
rs8025968	0.80[CEU][hapmap]
rs867916	0.84[AMR][1000 genomes]
rs907376	0.86[ASN][1000 genomes]
rs938090	0.82[AMR][1000 genomes]
rs939488	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv904415	chr15:77845959-77943935	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv904417	chr15:77851535-77935992	Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77862200-77875000	Weak transcription	Left Ventricle	heart
2	chr15:77864000-77871400	Weak transcription	Spleen	Spleen
3	chr15:77868200-77871600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr15:77868400-77872000	Enhancers	Fetal Muscle Leg	muscle
5	chr15:77868400-77874400	Weak transcription	Fetal Intestine Small	intestine
6	chr15:77868400-77874600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:77868600-77871400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:77868600-77874600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr15:77868800-77871000	Enhancers	Fetal Muscle Trunk	muscle
10	chr15:77868800-77871400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:77869000-77871400	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr15:77869000-77872000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:77869200-77871600	Enhancers	Brain Cingulate Gyrus	brain
14	chr15:77869400-77871200	Enhancers	Brain Anterior Caudate	brain
15	chr15:77869400-77871200	Enhancers	Brain Hippocampus Middle	brain
16	chr15:77869400-77871200	Enhancers	Brain Substantia Nigra	brain
17	chr15:77869400-77871600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:77869400-77871600	Enhancers	HSMMtube	muscle
19	chr15:77869400-77871800	Enhancers	Placenta	Placenta
20	chr15:77869600-77870800	Enhancers	Fetal Stomach	stomach
21	chr15:77869800-77870800	Enhancers	Brain Germinal Matrix	brain
22	chr15:77870200-77871000	Enhancers	Stomach Smooth Muscle	stomach
23	chr15:77870200-77873000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:77870200-77873600	Weak transcription	Fetal Brain Female	brain
25	chr15:77870200-77876600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:77870400-77871000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:77870400-77871000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr15:77870400-77873400	Weak transcription	Fetal Brain Male	brain
29	chr15:77870400-77876600	Weak transcription	Fetal Heart	heart
30	chr15:77870600-77873000	Weak transcription	Brain Angular Gyrus	brain
31	chr15:77870600-77875200	Weak transcription	Right Ventricle	heart

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