Variant report

Variant	rs2667767
Chromosome Location	chr15:77876031-77876032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77874644..77877112-chr15:77878679..77882430,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1007537	0.86[JPT][hapmap]
rs10152850	0.83[EUR][1000 genomes]
rs1055691	0.83[CEU][hapmap];0.90[CHB][hapmap]
rs1058129	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs11635634	0.81[EUR][1000 genomes]
rs12913005	0.83[CEU][hapmap]
rs2055903	0.89[YRI][hapmap]
rs2271396	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs2271397	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs2271398	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs2516302	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2667764	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2667775	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2667781	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2667782	0.83[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2667783	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2682910	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2682921	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2682922	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs2682924	0.81[EUR][1000 genomes]
rs2682927	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs2867311	0.84[EUR][1000 genomes]
rs2867312	0.83[EUR][1000 genomes]
rs4886519	0.83[EUR][1000 genomes]
rs4886883	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4886889	0.84[EUR][1000 genomes]
rs57471224	0.89[EUR][1000 genomes]
rs59745219	0.92[EUR][1000 genomes]
rs60701760	0.89[EUR][1000 genomes]
rs7162113	1.00[JPT][hapmap]
rs7497168	0.89[EUR][1000 genomes]
rs867916	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs907374	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs907376	0.98[ASN][1000 genomes]
rs907383	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs907390	0.84[EUR][1000 genomes]
rs907392	0.82[EUR][1000 genomes]
rs907393	0.84[EUR][1000 genomes]
rs907395	0.82[CEU][hapmap]
rs938090	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs939488	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv904415	chr15:77845959-77943935	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv904417	chr15:77851535-77935992	Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77870200-77876600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:77870400-77876600	Weak transcription	Fetal Heart	heart
3	chr15:77871400-77876600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:77874400-77877000	Enhancers	Fetal Intestine Small	intestine
5	chr15:77874600-77881000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr15:77874800-77876400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:77875000-77876400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr15:77875400-77881400	Weak transcription	Brain Hippocampus Middle	brain
9	chr15:77875600-77890000	Weak transcription	Right Ventricle	heart
10	chr15:77875600-77892000	Weak transcription	Right Atrium	heart
11	chr15:77876000-77876400	Weak transcription	Fetal Intestine Large	intestine

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