Variant report

Variant	rs907390
Chromosome Location	chr15:77902419-77902420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:77901709..77903452-chr15:77906613..77909214,2	MCF-7	breast:
2	chr15:77891327..77896574-chr15:77898422..77902980,9	K562	blood:
3	chr15:77900844..77903141-chr15:77904661..77906674,2	K562	blood:
4	chr15:77901946..77904333-chr15:77939877..77941758,2	K562	blood:
5	chr15:77901988..77905265-chr15:77907024..77909154,3	MCF-7	breast:
6	chr15:77898597..77902901-chr15:77907031..77910421,4	K562	blood:
7	chr15:77899424..77903075-chr15:77914224..77917029,3	K562	blood:
8	chr15:77888337..77891310-chr15:77900138..77902706,2	MCF-7	breast:
9	chr15:77893403..77895031-chr15:77900449..77902980,2	K562	blood:
10	chr15:77902198..77904238-chr15:77912623..77914841,2	K562	blood:

No data

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10152850	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10459650	0.83[CEU][hapmap];0.83[CHB][hapmap]
rs1058129	0.93[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2271396	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2271397	0.96[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2271398	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2516302	0.87[EUR][1000 genomes]
rs2667764	0.87[EUR][1000 genomes]
rs2667767	0.84[EUR][1000 genomes]
rs2682910	0.87[EUR][1000 genomes]
rs2867311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867312	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886519	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4886883	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4886889	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57471224	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59745219	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60701760	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7497168	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8027905	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs867916	0.88[EUR][1000 genomes]
rs883669	0.85[CEU][hapmap]
rs907374	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs907392	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs907393	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs907395	0.89[CEU][hapmap];0.88[CHB][hapmap];0.83[ASN][1000 genomes]
rs907396	0.82[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]
rs938090	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv904415	chr15:77845959-77943935	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv904417	chr15:77851535-77935992	Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1036749	chr15:77884026-77912408	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv904419	chr15:77897197-77943935	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77897200-77903000	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr15:77897400-77903800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:77898000-77903800	Weak transcription	Fetal Brain Female	brain
4	chr15:77898400-77906400	Weak transcription	Pancreas	Pancrea
5	chr15:77898600-77903200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:77899200-77903800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:77899200-77905800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr15:77899400-77904200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:77899600-77903400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:77899800-77903000	Weak transcription	Fetal Lung	lung
11	chr15:77899800-77903600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:77899800-77906400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:77899800-77908000	Weak transcription	Ovary	ovary
14	chr15:77900000-77903200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:77900000-77904200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:77900000-77904200	Weak transcription	Spleen	Spleen
17	chr15:77900200-77903000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:77900200-77906200	Weak transcription	Fetal Intestine Small	intestine
19	chr15:77900400-77902800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:77900400-77907400	Weak transcription	Left Ventricle	heart
21	chr15:77900600-77902600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr15:77900600-77902800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr15:77900600-77903600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr15:77900600-77904800	Weak transcription	Brain Germinal Matrix	brain
25	chr15:77900800-77902800	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr15:77900800-77904200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:77900800-77905400	Weak transcription	Fetal Stomach	stomach
28	chr15:77901000-77903400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr15:77901000-77914200	Weak transcription	Right Atrium	heart
30	chr15:77901200-77902600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr15:77901200-77902600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr15:77901200-77902800	Weak transcription	Fetal Muscle Leg	muscle
33	chr15:77901400-77902600	Weak transcription	Brain Angular Gyrus	brain
34	chr15:77901400-77902800	Weak transcription	Brain Anterior Caudate	brain
35	chr15:77901400-77903000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr15:77901400-77903200	Weak transcription	Brain Hippocampus Middle	brain
37	chr15:77901400-77903600	Weak transcription	HSMMtube	muscle
38	chr15:77901600-77903000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr15:77901600-77912800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:77901800-77902600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:77901800-77902600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr15:77901800-77903600	Weak transcription	K562	blood
43	chr15:77901800-77906200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr15:77902000-77903600	Weak transcription	Placenta	Placenta
45	chr15:77902200-77902800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr15:77902200-77902800	Enhancers	Colonic Mucosa	Colon
47	chr15:77902200-77903600	Weak transcription	Brain Substantia Nigra	brain
48	chr15:77902400-77902600	Enhancers	Fetal Muscle Trunk	muscle
49	chr15:77902400-77905600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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