Variant report

Variant	rs907487
Chromosome Location	chr12:63019450-63019451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63017661..63021132-chr12:63021138..63024799,3	K562	blood:
2	chr12:63018644..63021186-chr12:63028824..63030627,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10160870	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506444	0.82[JPT][hapmap]
rs10735910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10747968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10784312	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10877890	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10877893	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10877895	0.81[ASW][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[ASN][1000 genomes]
rs10877896	0.82[CHD][hapmap]
rs10877897	0.90[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.84[ASN][1000 genomes]
rs10877899	0.95[JPT][hapmap]
rs12582199	0.84[ASN][1000 genomes]
rs1498716	0.82[JPT][hapmap]
rs2133303	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2359381	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4763184	0.91[JPT][hapmap]
rs4763187	0.82[JPT][hapmap]
rs4763188	0.82[JPT][hapmap]
rs4763189	0.82[JPT][hapmap]
rs7308938	0.91[JPT][hapmap]
rs907486	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs925461	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs964644	0.82[JPT][hapmap]
rs9971786	0.82[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs907487	CTDSP2	cis	cerebellum	SCAN

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62999400-63025000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:63000200-63020600	Weak transcription	HMEC	breast
3	chr12:63000800-63024200	Weak transcription	Fetal Brain Female	brain
4	chr12:63003200-63023800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:63007800-63024800	Weak transcription	NH-A	brain
6	chr12:63008000-63023600	Weak transcription	NHDF-Ad	bronchial
7	chr12:63010200-63025200	Weak transcription	HSMMtube	muscle
8	chr12:63010600-63020600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:63010600-63022200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr12:63011200-63020600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr12:63011600-63023200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr12:63012400-63023800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr12:63012600-63023400	Weak transcription	A549	lung
14	chr12:63013800-63025200	Weak transcription	Right Atrium	heart
15	chr12:63016200-63022400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr12:63016400-63020200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr12:63016400-63022400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr12:63017600-63019800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr12:63017600-63019800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr12:63017600-63019800	Enhancers	Osteobl	bone
21	chr12:63017600-63020200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr12:63017800-63019800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr12:63018000-63019800	Enhancers	Liver	Liver
24	chr12:63018000-63020200	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr12:63018800-63019600	Enhancers	Fetal Kidney	kidney
26	chr12:63018800-63020400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr12:63019000-63019600	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr12:63019000-63019600	Enhancers	HepG2	liver
29	chr12:63019000-63019800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr12:63019000-63019800	Enhancers	Placenta	Placenta
31	chr12:63019200-63019600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr12:63019200-63019600	Enhancers	Pancreas	Pancrea
33	chr12:63019200-63019800	Enhancers	Stomach Mucosa	stomach
34	chr12:63019400-63019600	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr12:63019400-63019600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr12:63019400-63019600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr12:63019400-63020000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr12:63019400-63022800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr12:63019400-63025000	Weak transcription	Adipose Nuclei	Adipose

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