Variant report

Variant	rs911498
Chromosome Location	chr11:34240676-34240677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34239663..34242174-chr11:34378440..34380347,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1018445	0.91[EUR][1000 genomes]
rs11032553	0.92[EUR][1000 genomes]
rs11032560	0.98[ASN][1000 genomes]
rs16925312	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1983756	0.87[CHB][hapmap];0.91[CHD][hapmap];0.81[ASN][1000 genomes]
rs2092637	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2092638	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2467371	0.85[ASN][1000 genomes]
rs2475163	0.93[CHB][hapmap];0.86[CHD][hapmap]
rs2611082	0.94[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2611083	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs2611084	0.94[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2611141	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2746626	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs2746631	0.91[EUR][1000 genomes]
rs28895983	0.84[ASN][1000 genomes]
rs289978	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs289985	0.88[CEU][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs2955948	0.93[CHB][hapmap];0.91[CHD][hapmap];0.84[ASN][1000 genomes]
rs911499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1050413	chr11:34237529-34259820	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2762905	chr11:34238653-34256130	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34219000-34240800	Weak transcription	Left Ventricle	heart
2	chr11:34226600-34244600	Weak transcription	Small Intestine	intestine
3	chr11:34227000-34244400	Weak transcription	Pancreas	Pancrea
4	chr11:34229200-34243000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:34230600-34244400	Weak transcription	Right Ventricle	heart
6	chr11:34230800-34241000	Weak transcription	Placenta	Placenta
7	chr11:34232400-34241800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:34234800-34241600	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:34235600-34245600	Weak transcription	Spleen	Spleen
10	chr11:34236800-34241200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:34236800-34241800	Weak transcription	Lung	lung
12	chr11:34236800-34244200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:34236800-34244400	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:34237000-34241200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:34237000-34241200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:34237000-34241200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:34237000-34244200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr11:34237000-34244200	Weak transcription	Osteobl	bone
19	chr11:34237000-34244400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:34237000-34244400	Weak transcription	Right Atrium	heart
21	chr11:34237000-34244400	Weak transcription	HSMMtube	muscle
22	chr11:34237200-34241200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:34237200-34243800	Weak transcription	Liver	Liver
24	chr11:34237200-34255600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:34239200-34240800	Weak transcription	Psoas Muscle	Psoas
26	chr11:34239400-34242000	Enhancers	Fetal Lung	lung
27	chr11:34239800-34242200	Enhancers	A549	lung
28	chr11:34240000-34242000	Enhancers	HepG2	liver

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