Variant report

Variant	rs2611083
Chromosome Location	chr11:34242078-34242079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34239663..34242174-chr11:34378440..34380347,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1018445	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11032553	0.82[EUR][1000 genomes]
rs2092637	0.89[EUR][1000 genomes]
rs2611082	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs2611084	0.84[CEU][hapmap];0.81[YRI][hapmap];0.89[EUR][1000 genomes]
rs2746626	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2746631	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs289978	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs289980	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs289981	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs289984	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs289985	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs911498	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs911499	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1050413	chr11:34237529-34259820	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2762905	chr11:34238653-34256130	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34226600-34244600	Weak transcription	Small Intestine	intestine
2	chr11:34227000-34244400	Weak transcription	Pancreas	Pancrea
3	chr11:34229200-34243000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:34230600-34244400	Weak transcription	Right Ventricle	heart
5	chr11:34235600-34245600	Weak transcription	Spleen	Spleen
6	chr11:34236800-34244200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:34236800-34244400	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:34237000-34244200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:34237000-34244200	Weak transcription	Osteobl	bone
10	chr11:34237000-34244400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:34237000-34244400	Weak transcription	Right Atrium	heart
12	chr11:34237000-34244400	Weak transcription	HSMMtube	muscle
13	chr11:34237200-34243800	Weak transcription	Liver	Liver
14	chr11:34237200-34255600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:34239800-34242200	Enhancers	A549	lung
16	chr11:34241200-34242200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:34241200-34242200	Enhancers	Adipose Nuclei	Adipose
18	chr11:34241200-34242200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr11:34241200-34243200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr11:34241400-34242200	Enhancers	Left Ventricle	heart
21	chr11:34241600-34242200	Enhancers	Placenta	Placenta
22	chr11:34241800-34242200	Enhancers	Fetal Muscle Trunk	muscle
23	chr11:34241800-34242200	Enhancers	Lung	lung
24	chr11:34241800-34242200	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr11:34242000-34242200	Weak transcription	Fetal Heart	heart
26	chr11:34242000-34243600	Weak transcription	HepG2	liver
27	chr11:34242000-34243800	Weak transcription	Colon Smooth Muscle	Colon
28	chr11:34242000-34243800	Weak transcription	Fetal Lung	lung
29	chr11:34242000-34245000	Weak transcription	Psoas Muscle	Psoas

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