Variant report

Variant	rs289981
Chromosome Location	chr11:34245173-34245174
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34243758..34246398-chr11:34366962..34369270,2	MCF-7	breast:
2	chr11:34244635..34246968-chr11:34254314..34256180,3	K562	blood:
3	chr11:34244635..34246968-chr11:34254432..34256180,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1018445	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836154	1.00[ASN][1000 genomes]
rs2611082	0.82[CEU][hapmap]
rs2611083	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2746626	0.83[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746631	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs289976	1.00[ASN][1000 genomes]
rs289978	0.83[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs289979	1.00[ASN][1000 genomes]
rs289980	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs289983	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs289984	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs289985	0.87[CEU][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1050413	chr11:34237529-34259820	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2762905	chr11:34238653-34256130	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34235600-34245600	Weak transcription	Spleen	Spleen
2	chr11:34237200-34255600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:34242200-34246400	Weak transcription	A549	lung
4	chr11:34243000-34245200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr11:34243600-34247000	Enhancers	HepG2	liver
6	chr11:34243800-34245200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr11:34243800-34245400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr11:34243800-34245400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:34243800-34245600	Enhancers	Liver	Liver
10	chr11:34243800-34246000	Enhancers	Colon Smooth Muscle	Colon
11	chr11:34243800-34247000	Enhancers	Fetal Stomach	stomach
12	chr11:34243800-34247200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr11:34244000-34245200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr11:34244000-34245200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
15	chr11:34244000-34245200	Enhancers	Fetal Muscle Leg	muscle
16	chr11:34244000-34245400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr11:34244000-34245400	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr11:34244000-34245600	Enhancers	Placenta	Placenta
19	chr11:34244000-34247000	Enhancers	Fetal Intestine Small	intestine
20	chr11:34244200-34245200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:34244200-34245200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:34244200-34245200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:34244200-34245200	Enhancers	Ovary	ovary
24	chr11:34244200-34245200	Enhancers	NHDF-Ad	bronchial
25	chr11:34244200-34245400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr11:34244200-34245400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr11:34244200-34245400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:34244200-34245400	Enhancers	Adipose Nuclei	Adipose
29	chr11:34244200-34245400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr11:34244200-34245400	Enhancers	Fetal Muscle Trunk	muscle
31	chr11:34244200-34245400	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr11:34244200-34245600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:34244200-34245600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:34244200-34245600	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr11:34244200-34245600	Enhancers	Fetal Kidney	kidney
36	chr11:34244200-34245600	Enhancers	Stomach Mucosa	stomach
37	chr11:34244200-34247000	Enhancers	Duodenum Mucosa	Duodenum
38	chr11:34244400-34245200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:34244400-34245200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr11:34244400-34245200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr11:34244400-34245200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:34244400-34245200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:34244400-34245200	Enhancers	Aorta	Aorta
44	chr11:34244400-34245200	Enhancers	Left Ventricle	heart
45	chr11:34244400-34245200	Enhancers	Pancreas	Pancrea
46	chr11:34244400-34245200	Enhancers	Right Atrium	heart
47	chr11:34244400-34245200	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr11:34244400-34245200	Enhancers	HSMM	muscle
49	chr11:34244400-34245200	Enhancers	HSMMtube	muscle
50	chr11:34244400-34245200	Flanking Active TSS	NH-A	brain

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