Variant report

Variant	rs10836154
Chromosome Location	chr11:34108305-34108306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr11:34108170-34108772	GM12878	blood:	n/a	n/a
2	POLR2A	chr11:34107223-34108771	K562	blood:	n/a	n/a
3	SPI1	chr11:34108196-34108414	GM12891	blood:	n/a	n/a
4	SPI1	chr11:34108183-34108707	GM12891	blood:	n/a	chr11:34108541-34108554

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34073481..34075734-chr11:34105011..34109017,4	MCF-7	breast:
2	chr11:34108216..34109873-chr11:34119839..34122564,2	MCF-7	breast:
3	chr11:34106069..34110524-chr11:34130126..34133963,4	K562	blood:
4	chr11:34106541..34110325-chr11:34122744..34126295,3	K562	blood:
5	chr11:34098911..34101667-chr11:34106507..34109187,2	MCF-7	breast:
6	chr11:34072805..34076700-chr11:34102916..34109372,5	MCF-7	breast:

No data

Variant related genes	Relation type
CAPRIN1	TF binding region
ENSG00000135387	Chromatin interaction

rs_ID	r²[population]
rs1018445	1.00[ASN][1000 genomes]
rs10768040	1.00[ASN][1000 genomes]
rs10836137	1.00[ASN][1000 genomes]
rs11032438	1.00[ASN][1000 genomes]
rs11032453	1.00[ASN][1000 genomes]
rs11032454	1.00[ASN][1000 genomes]
rs11032472	1.00[ASN][1000 genomes]
rs11032512	1.00[ASW][hapmap];1.00[MKK][hapmap]
rs11605421	1.00[ASN][1000 genomes]
rs12417148	1.00[ASN][1000 genomes]
rs12421417	1.00[ASN][1000 genomes]
rs2746626	1.00[ASN][1000 genomes]
rs2746631	1.00[ASN][1000 genomes]
rs289976	1.00[ASN][1000 genomes]
rs289978	1.00[ASN][1000 genomes]
rs289979	1.00[ASN][1000 genomes]
rs289980	1.00[ASN][1000 genomes]
rs289981	1.00[ASN][1000 genomes]
rs289985	1.00[ASN][1000 genomes]
rs7945864	1.00[ASN][1000 genomes]
rs9282776	1.00[ASN][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs10836154	ELP4	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34079000-34126600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:34083400-34126600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:34083600-34124800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:34088600-34110800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:34088600-34124600	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:34088800-34124000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:34091000-34123400	Strong transcription	Fetal Muscle Trunk	muscle
8	chr11:34091000-34123400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr11:34091200-34123600	Strong transcription	Dnd41	blood
10	chr11:34091600-34123800	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:34091600-34124200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr11:34091800-34123400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:34091800-34124200	Strong transcription	Fetal Thymus	thymus
14	chr11:34091800-34124600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:34091800-34124800	Strong transcription	Fetal Intestine Large	intestine
16	chr11:34092000-34119800	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr11:34092600-34110600	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:34092600-34122200	Strong transcription	Fetal Brain Female	brain
19	chr11:34092600-34123000	Strong transcription	GM12878-XiMat	blood
20	chr11:34092600-34123400	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:34092600-34124800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:34092600-34125000	Strong transcription	Liver	Liver
23	chr11:34093000-34110600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:34093000-34122400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:34093200-34122400	Strong transcription	Primary B cells from peripheral blood	blood
26	chr11:34093200-34123200	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr11:34093200-34123400	Strong transcription	Placenta	Placenta
28	chr11:34093400-34122400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:34093400-34123000	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr11:34093400-34124000	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr11:34093600-34116600	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:34093600-34125000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:34094000-34124000	Strong transcription	Fetal Lung	lung
34	chr11:34095000-34119600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
35	chr11:34096600-34110600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:34096600-34124000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:34096800-34122400	Strong transcription	Primary T cells from cord blood	blood
38	chr11:34097000-34123400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr11:34097200-34123400	Strong transcription	Duodenum Mucosa	Duodenum
40	chr11:34097200-34126200	Weak transcription	Stomach Mucosa	stomach
41	chr11:34097400-34110600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:34097400-34110600	Strong transcription	Brain Anterior Caudate	brain
43	chr11:34097400-34123000	Strong transcription	Stomach Smooth Muscle	stomach
44	chr11:34097600-34122400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:34097600-34122600	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr11:34097600-34123200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:34097800-34110400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:34098000-34110800	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr11:34098000-34124000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr11:34098000-34124000	Strong transcription	Osteobl	bone

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