Variant report

Variant	rs289979
Chromosome Location	chr11:34241233-34241234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34239663..34242174-chr11:34378440..34380347,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1018445	1.00[ASN][1000 genomes]
rs10836154	1.00[ASN][1000 genomes]
rs2746626	1.00[ASN][1000 genomes]
rs2746631	1.00[ASN][1000 genomes]
rs289976	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs289978	1.00[ASN][1000 genomes]
rs289980	1.00[ASN][1000 genomes]
rs289981	1.00[ASN][1000 genomes]
rs289985	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1050413	chr11:34237529-34259820	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2762905	chr11:34238653-34256130	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34226600-34244600	Weak transcription	Small Intestine	intestine
2	chr11:34227000-34244400	Weak transcription	Pancreas	Pancrea
3	chr11:34229200-34243000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:34230600-34244400	Weak transcription	Right Ventricle	heart
5	chr11:34232400-34241800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:34234800-34241600	Weak transcription	Fetal Muscle Leg	muscle
7	chr11:34235600-34245600	Weak transcription	Spleen	Spleen
8	chr11:34236800-34241800	Weak transcription	Lung	lung
9	chr11:34236800-34244200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:34236800-34244400	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:34237000-34244200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:34237000-34244200	Weak transcription	Osteobl	bone
13	chr11:34237000-34244400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:34237000-34244400	Weak transcription	Right Atrium	heart
15	chr11:34237000-34244400	Weak transcription	HSMMtube	muscle
16	chr11:34237200-34243800	Weak transcription	Liver	Liver
17	chr11:34237200-34255600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:34239400-34242000	Enhancers	Fetal Lung	lung
19	chr11:34239800-34242200	Enhancers	A549	lung
20	chr11:34240000-34242000	Enhancers	HepG2	liver
21	chr11:34241000-34241400	Weak transcription	Left Ventricle	heart
22	chr11:34241000-34241400	Weak transcription	Psoas Muscle	Psoas
23	chr11:34241000-34242000	Enhancers	Fetal Heart	heart
24	chr11:34241200-34241400	Bivalent Enhancer	Fetal Kidney	kidney
25	chr11:34241200-34241600	Weak transcription	Placenta	Placenta
26	chr11:34241200-34242000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:34241200-34242000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:34241200-34242000	Enhancers	Colon Smooth Muscle	Colon
29	chr11:34241200-34242000	Enhancers	Fetal Stomach	stomach
30	chr11:34241200-34242200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:34241200-34242200	Enhancers	Adipose Nuclei	Adipose
32	chr11:34241200-34242200	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr11:34241200-34243200	Enhancers	Skeletal Muscle Male	skeletal muscle

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