Variant report

Variant	rs289976
Chromosome Location	chr11:34235986-34235987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34230274..34232780-chr11:34235455..34237065,2	K562	blood:
2	chr11:34227935..34229540-chr11:34234431..34236788,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1018445	1.00[ASN][1000 genomes]
rs10836154	1.00[ASN][1000 genomes]
rs2746626	1.00[ASN][1000 genomes]
rs2746631	1.00[ASN][1000 genomes]
rs289978	1.00[ASN][1000 genomes]
rs289979	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs289980	1.00[ASN][1000 genomes]
rs289981	1.00[ASN][1000 genomes]
rs289985	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv515783	chr11:34230517-34237292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34218800-34236600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:34219000-34240800	Weak transcription	Left Ventricle	heart
3	chr11:34219200-34236600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:34226200-34236600	Weak transcription	Gastric	stomach
5	chr11:34226600-34244600	Weak transcription	Small Intestine	intestine
6	chr11:34227000-34236400	Weak transcription	HSMM	muscle
7	chr11:34227000-34236400	Weak transcription	Osteobl	bone
8	chr11:34227000-34236600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:34227000-34244400	Weak transcription	Pancreas	Pancrea
10	chr11:34227400-34236600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:34228400-34236400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:34228600-34236600	Weak transcription	Lung	lung
13	chr11:34228600-34236600	Weak transcription	Right Atrium	heart
14	chr11:34228800-34237200	Enhancers	HepG2	liver
15	chr11:34229200-34243000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:34230200-34236600	Weak transcription	HSMMtube	muscle
17	chr11:34230400-34236200	Weak transcription	NHEK	skin
18	chr11:34230600-34236400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:34230600-34238600	Weak transcription	Psoas Muscle	Psoas
20	chr11:34230600-34244400	Weak transcription	Right Ventricle	heart
21	chr11:34230800-34236400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:34230800-34241000	Weak transcription	Placenta	Placenta
23	chr11:34232400-34236600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:34232400-34236600	Weak transcription	Brain Hippocampus Middle	brain
25	chr11:34232400-34241800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:34234000-34236000	Enhancers	Fetal Lung	lung
27	chr11:34234000-34236600	Enhancers	A549	lung
28	chr11:34234000-34237000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr11:34234800-34236000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:34234800-34236800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:34234800-34241600	Weak transcription	Fetal Muscle Leg	muscle
32	chr11:34235000-34236800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:34235000-34237000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:34235000-34237200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:34235000-34237200	Enhancers	Liver	Liver
36	chr11:34235200-34236000	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr11:34235200-34237200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:34235200-34237200	Enhancers	NH-A	brain
39	chr11:34235200-34237600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:34235200-34237600	Enhancers	Hela-S3	cervix
41	chr11:34235400-34236000	Enhancers	NHDF-Ad	bronchial
42	chr11:34235400-34236200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:34235400-34236600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:34235600-34236200	Weak transcription	Adipose Nuclei	Adipose
45	chr11:34235600-34236600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:34235600-34236800	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr11:34235600-34245600	Weak transcription	Spleen	Spleen
48	chr11:34235800-34236000	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr11:34235800-34236000	Enhancers	Brain Anterior Caudate	brain
50	chr11:34235800-34236200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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