Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45429768..45432549-chr10:45433306..45435637,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10900131	0.81[ASN][1000 genomes]
rs10900134	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11239282	0.81[ASN][1000 genomes]
rs12356289	0.95[ASN][1000 genomes]
rs17417442	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3818714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7095984	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv466909	chr10:45408011-45446791	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv550714	chr10:45408011-45446791	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45417000-45434000	Weak transcription	Fetal Brain Female	brain
2	chr10:45427600-45433600	Enhancers	Fetal Muscle Leg	muscle
3	chr10:45428000-45433400	Enhancers	Placenta	Placenta
4	chr10:45428000-45436600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:45428400-45436800	Enhancers	HepG2	liver
6	chr10:45428800-45435400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:45430000-45433400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:45431200-45433400	Enhancers	Brain Hippocampus Middle	brain
9	chr10:45431200-45453200	Weak transcription	Gastric	stomach
10	chr10:45431400-45435800	Weak transcription	Liver	Liver
11	chr10:45431600-45434000	Weak transcription	Colonic Mucosa	Colon
12	chr10:45431600-45436000	Weak transcription	Stomach Mucosa	stomach
13	chr10:45432000-45434600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:45432200-45434400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:45432400-45434200	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr10:45432400-45434200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr10:45432600-45434200	Weak transcription	NHDF-Ad	bronchial
18	chr10:45433200-45433400	Enhancers	Fetal Muscle Trunk	muscle
19	chr10:45433200-45433400	Enhancers	Left Ventricle	heart
20	chr10:45433200-45434400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:45433200-45435000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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