Variant report

Variant	rs12356289
Chromosome Location	chr10:45445275-45445276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:45443867..45446149-chr10:45450890..45453050,2	MCF-7	breast:
2	chr10:45444691..45447069-chr10:45452489..45454893,3	MCF-7	breast:
3	chr10:45444920..45446701-chr10:45447685..45449342,2	MCF-7	breast:
4	chr10:45443642..45445614-chr10:45473537..45475960,2	MCF-7	breast:
5	chr10:45443748..45446726-chr10:45456991..45458960,2	MCF-7	breast:
6	chr10:45439564..45443140-chr10:45444900..45447735,4	MCF-7	breast:
7	chr10:45443393..45446085-chr10:45453694..45455666,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273363	Chromatin interaction
ENSG00000165507	Chromatin interaction
ENSG00000107551	Chromatin interaction
ENSG00000224812	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10900134	0.98[ASN][1000 genomes]
rs11239282	0.80[ASN][1000 genomes]
rs17417442	0.97[ASN][1000 genomes]
rs3818714	0.96[ASN][1000 genomes]
rs7095984	0.98[ASN][1000 genomes]
rs914694	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv466909	chr10:45408011-45446791	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv550714	chr10:45408011-45446791	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1035235	chr10:45442303-45467948	Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45431200-45453200	Weak transcription	Gastric	stomach
2	chr10:45440800-45445800	Enhancers	Adipose Nuclei	Adipose
3	chr10:45441000-45446600	Enhancers	Fetal Muscle Leg	muscle
4	chr10:45441200-45447200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:45441400-45447600	Enhancers	Fetal Intestine Small	intestine
6	chr10:45441400-45449200	Enhancers	Fetal Heart	heart
7	chr10:45441600-45446200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:45441800-45446400	Enhancers	Primary B cells from peripheral blood	blood
9	chr10:45442000-45446400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr10:45442000-45451200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:45442400-45446200	Enhancers	Primary B cells from cord blood	blood
12	chr10:45442400-45451000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:45442400-45453400	Weak transcription	Osteobl	bone
14	chr10:45442800-45446200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:45442800-45446200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr10:45442800-45446600	Enhancers	Fetal Muscle Trunk	muscle
17	chr10:45442800-45446800	Enhancers	Left Ventricle	heart
18	chr10:45443000-45445600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:45443000-45445800	Enhancers	Spleen	Spleen
20	chr10:45443000-45449200	Enhancers	Right Atrium	heart
21	chr10:45443200-45445800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:45443200-45446200	Enhancers	Pancreas	Pancrea
23	chr10:45443200-45449600	Enhancers	Placenta	Placenta
24	chr10:45443400-45445800	Enhancers	Primary hematopoietic stem cells	blood
25	chr10:45443400-45446400	Enhancers	Duodenum Mucosa	Duodenum
26	chr10:45443400-45447200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:45443400-45454000	Weak transcription	Esophagus	oesophagus
28	chr10:45443600-45446200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:45443800-45446600	Enhancers	GM12878-XiMat	blood
30	chr10:45443800-45448000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:45443800-45449600	Enhancers	HSMMtube	muscle
32	chr10:45443800-45453000	Weak transcription	Lung	lung
33	chr10:45443800-45453200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr10:45443800-45454000	Weak transcription	Psoas Muscle	Psoas
35	chr10:45444000-45448400	Weak transcription	Fetal Thymus	thymus
36	chr10:45444000-45449200	Enhancers	HepG2	liver
37	chr10:45444000-45451600	Weak transcription	Liver	Liver
38	chr10:45444200-45448400	Weak transcription	Primary T cells from cord blood	blood
39	chr10:45444400-45446200	Enhancers	Brain Substantia Nigra	brain
40	chr10:45444400-45446200	Enhancers	Fetal Lung	lung
41	chr10:45444400-45446400	Enhancers	Right Ventricle	heart
42	chr10:45444400-45448400	Weak transcription	HSMM	muscle
43	chr10:45444400-45453600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr10:45444600-45446400	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr10:45444600-45446400	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr10:45444600-45446600	Enhancers	Fetal Intestine Large	intestine
47	chr10:45444600-45448400	Weak transcription	Brain Anterior Caudate	brain
48	chr10:45444800-45446400	Enhancers	Brain Hippocampus Middle	brain
49	chr10:45445000-45445400	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr10:45445000-45445600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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