Variant report

Variant	rs915228
Chromosome Location	chr9:98444303-98444304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10990447	0.84[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs10990491	0.94[CHB][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10991208	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10991384	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991400	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10991546	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12551252	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16910111	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1970200	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4743189	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7857949	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430083	chr9:98204245-98445645	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98441400-98446400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:98442400-98446200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:98443600-98444400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr9:98443600-98444600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr9:98443600-98444600	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr9:98443600-98444600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr9:98443600-98444600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr9:98443800-98444400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr9:98443800-98444600	Enhancers	Primary T cells from cord blood	blood
10	chr9:98443800-98444600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr9:98443800-98444600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr9:98443800-98444600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr9:98443800-98444800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr9:98443800-98444800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr9:98444000-98444400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:98444000-98444400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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