Variant report

Variant	rs917182
Chromosome Location	chr7:101229969-101229970
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1722226	1.00[MEX][hapmap]
rs4729740	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6972183	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7812158	0.80[EUR][1000 genomes]
rs848644	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv888821	chr7:101091470-101311540	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv831078	chr7:101094945-101257486	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv888822	chr7:101105017-101330734	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv888824	chr7:101109073-101330734	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv888825	chr7:101168283-101330734	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs917182	ARHGAP32	trans	lymphoblastoid	seeQTL
rs917182	SHE	trans	lymphoblastoid	seeQTL
rs917182	T	trans	lymphoblastoid	seeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101223800-101230000	Enhancers	Placenta	Placenta
2	chr7:101227400-101235200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:101227600-101230200	Enhancers	HepG2	liver
4	chr7:101227600-101230400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr7:101227600-101233400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:101227800-101231600	Enhancers	Fetal Intestine Small	intestine
7	chr7:101228000-101230200	Enhancers	Duodenum Mucosa	Duodenum
8	chr7:101228000-101230800	Enhancers	Fetal Intestine Large	intestine
9	chr7:101229400-101230200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:101229600-101230600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:101229600-101230600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:101229600-101230600	Enhancers	Fetal Kidney	kidney
13	chr7:101229600-101230600	Enhancers	K562	blood
14	chr7:101229800-101230400	Enhancers	Primary hematopoietic stem cells	blood
15	chr7:101229800-101230600	Enhancers	Rectal Mucosa Donor 29	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links