Variant report

Variant	rs920081
Chromosome Location	chr11:9735608-9735609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9601830..9604775-chr11:9735328..9738151,2	K562	blood:

Variant related genes	Relation type
ENSG00000166483	Chromatin interaction
ENSG00000243869	Chromatin interaction

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs10770057	0.92[ASN][1000 genomes]
rs10840290	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10840291	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10840292	0.99[ASN][1000 genomes]
rs11042471	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042472	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042473	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042474	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042475	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042476	0.92[ASN][1000 genomes]
rs11042477	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042478	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042481	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11042482	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11042483	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12271923	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12272107	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12272167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272277	0.99[ASN][1000 genomes]
rs12275468	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12280169	0.93[ASN][1000 genomes]
rs12280320	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12283340	0.84[ASN][1000 genomes]
rs12283521	0.92[ASN][1000 genomes]
rs12289312	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12291809	0.82[ASN][1000 genomes]
rs12295129	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12576997	0.82[AMR][1000 genomes]
rs12577241	0.82[AMR][1000 genomes]
rs1390679	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1390680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390681	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1390682	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1390683	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1390684	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1435462	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1496477	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1695613	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1874476	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1960386	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1960387	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2088293	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2101902	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132565	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2132566	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2132567	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2252354	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2252445	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2336805	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2453831	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2453832	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2454611	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2454612	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2572934	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2572935	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2572936	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2572937	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2572938	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2572939	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2572940	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2572941	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2572942	0.91[ASN][1000 genomes]
rs2572943	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2572944	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2572945	0.89[ASN][1000 genomes]
rs2572947	0.91[AMR][1000 genomes]
rs2572948	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2572949	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2572952	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2645007	0.93[ASN][1000 genomes]
rs2645008	0.93[ASN][1000 genomes]
rs2645010	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2645011	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2645012	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2645014	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2645015	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2645016	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2645018	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2645019	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2645021	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2645022	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2645023	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2645024	1.00[ASW][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2645025	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2649046	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2649047	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2649048	0.92[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs34043654	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs360044	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs360045	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs360046	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs360048	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs360050	0.82[AMR][1000 genomes]
rs360053	0.82[AMR][1000 genomes]
rs368731	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs376553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs379692	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs385846	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs389534	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs392815	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs397250	0.92[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs397602	0.92[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs397686	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs399898	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs408569	0.92[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs413976	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs414109	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs416766	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs416804	0.93[ASN][1000 genomes]
rs418931	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs419412	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs422061	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs424455	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs428747	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs429546	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs431908	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs435079	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs440523	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs441965	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs442722	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs443576	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs446146	0.93[ASN][1000 genomes]
rs447601	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4478983	0.93[ASN][1000 genomes]
rs449005	0.93[ASN][1000 genomes]
rs452169	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs476163	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4910491	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4910494	0.86[ASN][1000 genomes]
rs4910495	0.86[ASN][1000 genomes]
rs4910496	0.94[ASN][1000 genomes]
rs534901	0.93[ASN][1000 genomes]
rs581004	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs58960327	0.99[ASN][1000 genomes]
rs60466677	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs67598578	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7117197	0.87[ASN][1000 genomes]
rs72484737	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73410140	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7935643	0.99[ASN][1000 genomes]
rs7938818	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7949818	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs920080	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs920082	0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1045550	chr11:9718324-9790088	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9710200-9758400	Weak transcription	Psoas Muscle	Psoas
2	chr11:9711400-9754400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:9711600-9736600	Weak transcription	Gastric	stomach
4	chr11:9716000-9736600	Weak transcription	NHEK	skin
5	chr11:9716000-9738000	Weak transcription	HMEC	breast
6	chr11:9717600-9736600	Weak transcription	Fetal Stomach	stomach
7	chr11:9717600-9738800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:9717600-9739200	Weak transcription	NHLF	lung
9	chr11:9717600-9751000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:9717600-9751000	Weak transcription	Ovary	ovary
11	chr11:9717800-9736200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:9717800-9736200	Weak transcription	Fetal Intestine Large	intestine
13	chr11:9718200-9749600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:9719600-9736400	Weak transcription	Placenta	Placenta
15	chr11:9724000-9739400	Weak transcription	Fetal Lung	lung
16	chr11:9724200-9736800	Weak transcription	Thymus	Thymus
17	chr11:9725200-9736000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:9725200-9737600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:9725200-9738200	Weak transcription	Fetal Thymus	thymus
20	chr11:9725200-9740800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:9725200-9749600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr11:9725400-9736200	Weak transcription	Fetal Intestine Small	intestine
23	chr11:9725400-9737400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:9725400-9741800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:9725600-9748000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:9725800-9736200	Weak transcription	Primary T cells from cord blood	blood
27	chr11:9726400-9735800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:9726400-9735800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:9726400-9736800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr11:9726600-9736600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:9726600-9749600	Weak transcription	Liver	Liver
32	chr11:9729600-9755400	Genic enhancers	Primary B cells from peripheral blood	blood
33	chr11:9730400-9736000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:9730400-9737800	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr11:9730400-9739400	Weak transcription	Colon Smooth Muscle	Colon
36	chr11:9730600-9735800	Weak transcription	Osteobl	bone
37	chr11:9730600-9736800	Weak transcription	Fetal Muscle Leg	muscle
38	chr11:9730600-9737200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:9730600-9738000	Weak transcription	NH-A	brain
40	chr11:9730600-9738200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr11:9730600-9739400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr11:9730600-9739400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr11:9730600-9739400	Weak transcription	Small Intestine	intestine
44	chr11:9730600-9747200	Weak transcription	Pancreas	Pancrea
45	chr11:9730600-9758200	Weak transcription	Esophagus	oesophagus
46	chr11:9730800-9738000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr11:9730800-9738200	Weak transcription	Lung	lung
48	chr11:9730800-9738200	Weak transcription	HSMMtube	muscle
49	chr11:9731000-9737400	Weak transcription	Right Ventricle	heart
50	chr11:9731200-9740800	Weak transcription	Brain Substantia Nigra	brain

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