Variant report

Variant	rs920802
Chromosome Location	chr7:121970118-121970119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12234859	0.81[ASN][1000 genomes]
rs12532356	1.00[YRI][hapmap]
rs12706405	0.87[CHB][hapmap]
rs1899692	1.00[YRI][hapmap]
rs35285118	0.83[ASN][1000 genomes]
rs920803	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5931	chr7:121944137-121988594	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-121977600	Weak transcription	Gastric	stomach
2	chr7:121957400-121990800	Weak transcription	Pancreas	Pancrea
3	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:121958800-121994400	Weak transcription	Lung	lung
5	chr7:121961200-121980400	Weak transcription	Left Ventricle	heart
6	chr7:121962600-121993000	Weak transcription	Ovary	ovary
7	chr7:121967400-121971000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:121968000-121971000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:121968200-121970800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:121968400-121971000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr7:121968600-121970200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:121968800-121971000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr7:121969000-121976200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:121969200-121970600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:121969200-121971000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr7:121969200-121971000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr7:121969200-121971200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr7:121969400-121970200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr7:121969400-121972800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr7:121969600-121970800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:121969600-121971000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:121969800-121970200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr7:121970000-121971400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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