Variant report

Variant	rs12234859
Chromosome Location	chr7:121967670-121967671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12706405	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13241158	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2022124	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35285118	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35324203	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs798678	0.88[EUR][1000 genomes]
rs920802	0.81[ASN][1000 genomes]
rs920803	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5931	chr7:121944137-121988594	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-121977600	Weak transcription	Gastric	stomach
2	chr7:121957400-121990800	Weak transcription	Pancreas	Pancrea
3	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:121958800-121994400	Weak transcription	Lung	lung
5	chr7:121961200-121980400	Weak transcription	Left Ventricle	heart
6	chr7:121962600-121993000	Weak transcription	Ovary	ovary
7	chr7:121963000-121968800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:121964600-121968400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:121965400-121968200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:121965400-121968800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:121965400-121969800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:121965800-121968000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:121965800-121968200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr7:121966000-121968000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:121966000-121968200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:121966000-121968400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:121966800-121968200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:121967400-121969000	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr7:121967400-121971000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links