Variant report

Variant	rs13241158
Chromosome Location	chr7:121958195-121958196
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12234859	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12538608	0.88[YRI][hapmap]
rs12706405	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17462032	0.88[YRI][hapmap]
rs2022124	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35285118	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35324203	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs798678	1.00[CEU][hapmap];0.81[GIH][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes]
rs920802	0.87[CHB][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap]
rs920803	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5931	chr7:121944137-121988594	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-121958400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
2	chr7:121957400-121962400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:121957400-121962400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:121957400-121977600	Weak transcription	Gastric	stomach
5	chr7:121957400-121990800	Weak transcription	Pancreas	Pancrea
6	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr7:121957600-121958200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
8	chr7:121958000-121958200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr7:121958000-121958600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links