Variant report

Variant	rs35324203
Chromosome Location	chr7:121956771-121956772
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12234859	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12706405	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13241158	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2022124	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35285118	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs798678	0.85[EUR][1000 genomes]
rs920803	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5931	chr7:121944137-121988594	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121954600-121956800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
2	chr7:121954800-121956800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
3	chr7:121954800-121956800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
4	chr7:121954800-121957400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr7:121955000-121957400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:121955000-121957400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:121955000-121957400	Bivalent Enhancer	Lung	lung
8	chr7:121955000-121957400	Enhancers	Pancreas	Pancrea
9	chr7:121955200-121957400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr7:121955200-121957400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
11	chr7:121955200-121957400	Bivalent Enhancer	Psoas Muscle	Psoas
12	chr7:121955600-121957000	Bivalent Enhancer	Liver	Liver
13	chr7:121955800-121957400	Bivalent Enhancer	Brain Substantia Nigra	brain
14	chr7:121956000-121957400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
15	chr7:121956200-121956800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:121956200-121956800	Bivalent/Poised TSS	Aorta	Aorta
17	chr7:121956200-121957000	Bivalent Enhancer	Duodenum Mucosa	Duodenum
18	chr7:121956200-121957000	Bivalent Enhancer	Fetal Stomach	stomach
19	chr7:121956200-121957400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
20	chr7:121956200-121957400	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
21	chr7:121956200-121957400	Bivalent Enhancer	Fetal Lung	lung
22	chr7:121956200-121957400	Bivalent Enhancer	Fetal Muscle Leg	muscle
23	chr7:121956200-121957400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
24	chr7:121956400-121956800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:121956400-121956800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
26	chr7:121956400-121956800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
27	chr7:121956400-121956800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
28	chr7:121956400-121957000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:121956400-121957000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr7:121956400-121957000	Bivalent Enhancer	Fetal Intestine Large	intestine
31	chr7:121956400-121957000	Bivalent Enhancer	Fetal Intestine Small	intestine
32	chr7:121956400-121957000	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
33	chr7:121956400-121957200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
34	chr7:121956400-121957200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:121956400-121957200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:121956400-121957200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:121956400-121957200	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
38	chr7:121956400-121957200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr7:121956400-121957200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
40	chr7:121956400-121957200	Bivalent Enhancer	Esophagus	oesophagus
41	chr7:121956400-121957200	Active TSS	Right Atrium	heart
42	chr7:121956400-121957200	Bivalent Enhancer	Spleen	Spleen
43	chr7:121956400-121957400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
44	chr7:121956400-121957400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr7:121956400-121957400	Bivalent Enhancer	Fetal Brain Male	brain
46	chr7:121956400-121957400	Enhancers	Gastric	stomach
47	chr7:121956400-121957400	Bivalent Enhancer	Stomach Mucosa	stomach
48	chr7:121956400-121957600	Bivalent Enhancer	Left Ventricle	heart
49	chr7:121956600-121956800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
50	chr7:121956600-121956800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin

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