Variant report

Variant	rs922656
Chromosome Location	chr14:56472487-56472488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11622704	0.91[ASN][1000 genomes]
rs1188164	0.82[ASN][1000 genomes]
rs1188165	0.85[ASN][1000 genomes]
rs1188167	0.86[ASN][1000 genomes]
rs1188168	0.86[ASN][1000 genomes]
rs1188169	0.85[ASN][1000 genomes]
rs1188170	0.85[ASN][1000 genomes]
rs1188171	0.81[ASN][1000 genomes]
rs1188172	0.81[ASN][1000 genomes]
rs1188173	0.85[ASN][1000 genomes]
rs1188177	0.85[ASN][1000 genomes]
rs1188178	0.81[ASN][1000 genomes]
rs1188182	0.85[ASN][1000 genomes]
rs1188183	0.85[ASN][1000 genomes]
rs1188189	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1188195	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1188201	0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1188202	0.89[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1188205	0.83[ASN][1000 genomes]
rs922653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs922654	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs966880	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56468200-56473000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr14:56468800-56472600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
3	chr14:56468800-56472800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:56469000-56472600	Bivalent Enhancer	Fetal Thymus	thymus
5	chr14:56469600-56473200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr14:56470000-56472800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:56470400-56473000	Enhancers	Fetal Muscle Leg	muscle
8	chr14:56470400-56473000	Enhancers	Stomach Mucosa	stomach
9	chr14:56470600-56472600	Enhancers	Primary hematopoietic stem cells	blood
10	chr14:56470800-56472600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr14:56470800-56472800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:56470800-56473000	Enhancers	Dnd41	blood
13	chr14:56470800-56473200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr14:56471000-56472800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr14:56471000-56473000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr14:56471000-56473000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr14:56471000-56473200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr14:56471200-56472600	Flanking Active TSS	Osteobl	bone
19	chr14:56471200-56473000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr14:56471400-56472600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr14:56471400-56472800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr14:56471400-56472800	Flanking Active TSS	NH-A	brain
23	chr14:56471600-56472600	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr14:56471600-56472600	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr14:56471600-56472600	Flanking Active TSS	Fetal Intestine Small	intestine
26	chr14:56471600-56472800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:56471600-56473000	Enhancers	Fetal Muscle Trunk	muscle
28	chr14:56471600-56473000	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr14:56471800-56472600	Flanking Active TSS	Fetal Intestine Large	intestine
30	chr14:56471800-56472800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr14:56471800-56472800	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr14:56472000-56472600	Bivalent Enhancer	Primary T cells from cord blood	blood
33	chr14:56472000-56472600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr14:56472000-56472600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr14:56472000-56472600	Enhancers	Fetal Stomach	stomach
36	chr14:56472000-56472800	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr14:56472000-56472800	Enhancers	NHEK	skin
38	chr14:56472000-56473200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr14:56472200-56472600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr14:56472200-56472600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr14:56472200-56472600	Enhancers	Duodenum Mucosa	Duodenum
42	chr14:56472200-56472600	Enhancers	NHLF	lung
43	chr14:56472200-56472800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr14:56472200-56472800	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr14:56472200-56473000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr14:56472200-56473000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr14:56472200-56473200	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr14:56472200-56474200	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr14:56472400-56472600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr14:56472400-56472600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--

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