Variant report

Variant	rs1188178
Chromosome Location	chr14:56445897-56445898
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1188164	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1188165	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1188167	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1188168	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1188169	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1188170	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1188171	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1188172	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1188173	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1188177	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1188182	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1188183	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1188189	0.84[ASN][1000 genomes]
rs1188195	0.84[ASN][1000 genomes]
rs1188201	0.84[ASN][1000 genomes]
rs1188202	0.82[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs1188203	0.91[CHB][hapmap]
rs1188204	0.91[CHB][hapmap]
rs1188205	0.87[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8015854	0.97[ASN][1000 genomes]
rs922656	0.81[ASN][1000 genomes]
rs966880	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56439200-56451200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:56440000-56446200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr14:56440000-56446400	Enhancers	Brain Germinal Matrix	brain
4	chr14:56442800-56446600	Enhancers	Brain Substantia Nigra	brain
5	chr14:56443000-56446400	Enhancers	Brain Cingulate Gyrus	brain
6	chr14:56443600-56446200	Enhancers	Brain Anterior Caudate	brain
7	chr14:56443600-56446400	Enhancers	Brain Hippocampus Middle	brain
8	chr14:56443600-56446600	Enhancers	Brain Angular Gyrus	brain
9	chr14:56444800-56449200	Weak transcription	Ovary	ovary
10	chr14:56445600-56446200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr14:56445800-56446000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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