Variant report

Variant	rs924755
Chromosome Location	chr8:107215040-107215041
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10100211	0.89[AFR][1000 genomes]
rs10108157	0.82[AFR][1000 genomes]
rs13439045	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28642672	0.82[AFR][1000 genomes]
rs60554121	1.00[AMR][1000 genomes]
rs6985468	1.00[AMR][1000 genomes]
rs73305148	1.00[AMR][1000 genomes]
rs73305163	1.00[AMR][1000 genomes]
rs73305167	1.00[AMR][1000 genomes]
rs73305173	1.00[AMR][1000 genomes]
rs73305176	1.00[AMR][1000 genomes]
rs73305190	1.00[AMR][1000 genomes]
rs73698641	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107206400-107219000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:107212600-107218000	Weak transcription	Osteobl	bone
3	chr8:107212600-107218800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:107212800-107215200	Weak transcription	NHDF-Ad	bronchial
5	chr8:107212800-107215400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:107213400-107218600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:107214200-107215600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:107214200-107216000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:107214600-107215800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:107215000-107217000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:107215000-107218800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links