Variant report

Variant	rs73305148
Chromosome Location	chr8:107389883-107389884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13439045	1.00[AMR][1000 genomes]
rs60293753	1.00[AMR][1000 genomes]
rs60554121	1.00[AMR][1000 genomes]
rs6985468	1.00[AMR][1000 genomes]
rs73305163	1.00[AMR][1000 genomes]
rs73305167	1.00[AMR][1000 genomes]
rs73305173	1.00[AMR][1000 genomes]
rs73305176	1.00[AMR][1000 genomes]
rs73305190	1.00[AMR][1000 genomes]
rs73307197	1.00[AMR][1000 genomes]
rs73309233	1.00[AMR][1000 genomes]
rs73309246	1.00[AMR][1000 genomes]
rs73309280	1.00[AMR][1000 genomes]
rs73309281	1.00[AMR][1000 genomes]
rs73698641	1.00[AMR][1000 genomes]
rs7840485	1.00[AMR][1000 genomes]
rs924755	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107362400-107427000	Weak transcription	Aorta	Aorta
2	chr8:107362800-107397000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:107374400-107409800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:107381200-107403400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:107382000-107390400	Weak transcription	Gastric	stomach
6	chr8:107384400-107396600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:107384600-107404000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:107389600-107390200	Enhancers	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links