Variant report

Variant	rs73309246
Chromosome Location	chr8:107467588-107467589
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs60293753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60554121	1.00[AMR][1000 genomes]
rs61677096	0.81[AFR][1000 genomes]
rs6985468	1.00[AMR][1000 genomes]
rs73305148	1.00[AMR][1000 genomes]
rs73305163	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305167	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305173	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305176	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305190	1.00[AMR][1000 genomes]
rs73307197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73309233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73309280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73309281	1.00[AMR][1000 genomes]
rs73309288	0.81[AFR][1000 genomes]
rs73309292	0.81[AFR][1000 genomes]
rs73311204	0.91[AFR][1000 genomes]
rs73311205	0.91[AFR][1000 genomes]
rs7840485	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611844	chr8:107440038-107494918	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107457000-107470400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107466000-107467600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:107466000-107487000	Weak transcription	Aorta	Aorta
4	chr8:107467000-107468000	Enhancers	Stomach Mucosa	stomach
5	chr8:107467000-107468600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:107467000-107468600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:107467000-107469000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:107467000-107469600	Enhancers	HUVEC	blood vessel
9	chr8:107467200-107468600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:107467200-107469200	Enhancers	NH-A	brain
11	chr8:107467400-107468000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr8:107467400-107468200	Enhancers	Fetal Heart	heart
13	chr8:107467400-107468600	Enhancers	Osteobl	bone
14	chr8:107467400-107468800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:107467400-107469200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:107467400-107469400	Enhancers	HMEC	breast
17	chr8:107467400-107473800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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