Variant report

Variant	rs73309288
Chromosome Location	chr8:107515543-107515544
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107515040..107517376-chr8:107517992..107519843,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs60293753	0.81[AFR][1000 genomes]
rs61677096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73307197	0.81[AFR][1000 genomes]
rs73309233	0.81[AFR][1000 genomes]
rs73309246	0.81[AFR][1000 genomes]
rs73309280	0.81[AFR][1000 genomes]
rs73309292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311204	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311205	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107512600-107517800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:107513600-107517000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:107513600-107526200	Weak transcription	Brain Angular Gyrus	brain
5	chr8:107513800-107515600	Weak transcription	Pancreas	Pancrea
6	chr8:107513800-107515800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:107513800-107525000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr8:107514000-107515600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:107514000-107516600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:107514000-107519000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:107514000-107525600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:107514200-107519400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr8:107514400-107515600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:107514400-107515600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr8:107514400-107516600	Weak transcription	NHDF-Ad	bronchial
16	chr8:107514400-107517000	Weak transcription	Osteobl	bone
17	chr8:107514600-107515600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:107514600-107516600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:107514600-107518800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr8:107514600-107519400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr8:107514600-107519600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr8:107514600-107519600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr8:107515400-107515600	Enhancers	Brain Substantia Nigra	brain
24	chr8:107515400-107516800	Enhancers	HMEC	breast

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