Variant report

Variant	rs61677096
Chromosome Location	chr8:107510132-107510133
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs60293753	0.81[AFR][1000 genomes]
rs73307197	0.81[AFR][1000 genomes]
rs73309233	0.81[AFR][1000 genomes]
rs73309246	0.81[AFR][1000 genomes]
rs73309280	0.81[AFR][1000 genomes]
rs73309288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73309292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311204	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311205	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107475400-107511600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:107503600-107513400	Weak transcription	Spleen	Spleen
3	chr8:107504000-107513400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:107505800-107513400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr8:107506200-107511600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:107506800-107511800	Weak transcription	GM12878-XiMat	blood
7	chr8:107508600-107511800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:107508800-107511800	Weak transcription	Brain Angular Gyrus	brain
9	chr8:107509200-107513400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:107509400-107510600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:107509400-107511600	Weak transcription	NHDF-Ad	bronchial
12	chr8:107509400-107512000	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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