Variant report

Variant	rs73309292
Chromosome Location	chr8:107520461-107520462
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs60293753	0.81[AFR][1000 genomes]
rs61677096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73307197	0.81[AFR][1000 genomes]
rs73309233	0.81[AFR][1000 genomes]
rs73309246	0.81[AFR][1000 genomes]
rs73309280	0.81[AFR][1000 genomes]
rs73309288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311204	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311205	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107513600-107526200	Weak transcription	Brain Angular Gyrus	brain
3	chr8:107513800-107525000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr8:107514000-107525600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:107516800-107536200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:107518800-107520600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr8:107519000-107520800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:107519200-107520600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr8:107519200-107521600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:107520000-107520600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:107520200-107521400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr8:107520400-107522200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:107520400-107522200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:107520400-107522400	Weak transcription	Osteobl	bone
15	chr8:107520400-107523000	Weak transcription	NHDF-Ad	bronchial
16	chr8:107520400-107523600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:107520400-107525600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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