Variant report

Variant	rs926115
Chromosome Location	chr14:78029082-78029083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78028011..78030913-chr17:56735238..56737835,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000202077	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10136221	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142919	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12889681	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1474504	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1973866	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2091915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2142186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2178876	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899657	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4903598	0.87[AFR][1000 genomes]
rs4903601	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4903609	1.00[AMR][1000 genomes]
rs4903612	1.00[AMR][1000 genomes]
rs6574381	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7153567	0.84[AFR][1000 genomes]
rs7156665	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157643	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7400794	1.00[AMR][1000 genomes]
rs7401921	0.93[AFR][1000 genomes]
rs7401985	0.87[AFR][1000 genomes]
rs8003293	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8004422	1.00[AMR][1000 genomes]
rs8010591	1.00[AMR][1000 genomes]
rs8022297	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs963897	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9972134	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1053810	chr14:77987871-78148320	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1051554	chr14:78004196-78122980	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1794863	chr14:78024926-78048715	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77970200-78047200	Weak transcription	Fetal Heart	heart
2	chr14:77978800-78042200	Weak transcription	Fetal Brain Male	brain
3	chr14:77987800-78060000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:77988400-78029400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr14:78009600-78030000	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr14:78009800-78050800	Weak transcription	Psoas Muscle	Psoas
7	chr14:78010000-78029800	Strong transcription	Primary T cells from cord blood	blood
8	chr14:78010400-78030000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr14:78011000-78031800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr14:78011200-78045800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:78011400-78037400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:78013200-78030600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr14:78013200-78066200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr14:78016000-78040000	Weak transcription	Pancreas	Pancrea
15	chr14:78016200-78037200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr14:78016400-78061000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:78018000-78029400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr14:78018600-78044200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr14:78018800-78031800	Weak transcription	Ovary	ovary
20	chr14:78018800-78041600	Weak transcription	A549	lung
21	chr14:78018800-78047000	Weak transcription	Placenta	Placenta
22	chr14:78019400-78040800	Weak transcription	Hela-S3	cervix
23	chr14:78019800-78029600	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr14:78019800-78030600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:78020000-78030400	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr14:78020400-78029800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr14:78020400-78030000	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr14:78020800-78029200	Strong transcription	Stomach Smooth Muscle	stomach
29	chr14:78021200-78031000	Strong transcription	Duodenum Mucosa	Duodenum
30	chr14:78021400-78030200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr14:78021600-78047000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr14:78021800-78029800	Strong transcription	Adipose Nuclei	Adipose
33	chr14:78021800-78041200	Weak transcription	Small Intestine	intestine
34	chr14:78021800-78061000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr14:78021800-78068400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr14:78021800-78071600	Weak transcription	Colon Smooth Muscle	Colon
37	chr14:78022000-78030200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr14:78022000-78060800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr14:78022200-78041800	Weak transcription	Gastric	stomach
40	chr14:78022400-78030000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr14:78022400-78035200	Weak transcription	Fetal Kidney	kidney
42	chr14:78022400-78040200	Weak transcription	Aorta	Aorta
43	chr14:78022400-78047200	Weak transcription	Brain Germinal Matrix	brain
44	chr14:78022400-78049000	Weak transcription	Right Ventricle	heart
45	chr14:78022400-78055000	Weak transcription	Colonic Mucosa	Colon
46	chr14:78022600-78040000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr14:78022600-78041800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr14:78023000-78037000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr14:78023200-78029400	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr14:78023600-78040000	Weak transcription	HepG2	liver

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