Variant report

Variant	rs2091915
Chromosome Location	chr14:78030479-78030480
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77923078..77926177-chr14:78030298..78032609,3	MCF-7	breast:
2	chr14:78028011..78030913-chr17:56735238..56737835,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100591	Chromatin interaction
ENSG00000151445	Chromatin interaction
ENSG00000202077	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10132095	0.85[YRI][hapmap]
rs10136221	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142919	0.91[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12889681	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1474504	0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1973866	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2142186	0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2178876	0.91[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2364159	0.85[YRI][hapmap]
rs2364160	0.92[YRI][hapmap]
rs4145507	0.82[YRI][hapmap]
rs4145508	1.00[MEX][hapmap]
rs4899657	0.91[ASW][hapmap];0.91[LWK][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4903598	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs4903601	0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4903609	1.00[AMR][1000 genomes]
rs4903612	1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[AMR][1000 genomes]
rs6574381	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7153567	0.84[AFR][1000 genomes]
rs7156665	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157218	0.84[YRI][hapmap]
rs7157643	0.91[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7400794	1.00[AMR][1000 genomes]
rs7401921	0.91[YRI][hapmap];0.93[AFR][1000 genomes]
rs7401985	0.87[AFR][1000 genomes]
rs760258	0.85[YRI][hapmap]
rs8003293	0.91[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8004422	1.00[AMR][1000 genomes]
rs8010591	1.00[AMR][1000 genomes]
rs8022297	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs926114	0.83[ASW][hapmap];0.85[YRI][hapmap]
rs926115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs963897	0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9972134	0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1053810	chr14:77987871-78148320	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1051554	chr14:78004196-78122980	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1794863	chr14:78024926-78048715	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77970200-78047200	Weak transcription	Fetal Heart	heart
2	chr14:77978800-78042200	Weak transcription	Fetal Brain Male	brain
3	chr14:77987800-78060000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:78009800-78050800	Weak transcription	Psoas Muscle	Psoas
5	chr14:78011000-78031800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr14:78011200-78045800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr14:78011400-78037400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:78013200-78030600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr14:78013200-78066200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:78016000-78040000	Weak transcription	Pancreas	Pancrea
11	chr14:78016200-78037200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr14:78016400-78061000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:78018600-78044200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:78018800-78031800	Weak transcription	Ovary	ovary
15	chr14:78018800-78041600	Weak transcription	A549	lung
16	chr14:78018800-78047000	Weak transcription	Placenta	Placenta
17	chr14:78019400-78040800	Weak transcription	Hela-S3	cervix
18	chr14:78019800-78030600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr14:78021200-78031000	Strong transcription	Duodenum Mucosa	Duodenum
20	chr14:78021600-78047000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr14:78021800-78041200	Weak transcription	Small Intestine	intestine
22	chr14:78021800-78061000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr14:78021800-78068400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr14:78021800-78071600	Weak transcription	Colon Smooth Muscle	Colon
25	chr14:78022000-78060800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr14:78022200-78041800	Weak transcription	Gastric	stomach
27	chr14:78022400-78035200	Weak transcription	Fetal Kidney	kidney
28	chr14:78022400-78040200	Weak transcription	Aorta	Aorta
29	chr14:78022400-78047200	Weak transcription	Brain Germinal Matrix	brain
30	chr14:78022400-78049000	Weak transcription	Right Ventricle	heart
31	chr14:78022400-78055000	Weak transcription	Colonic Mucosa	Colon
32	chr14:78022600-78040000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr14:78022600-78041800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr14:78023000-78037000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr14:78023600-78040000	Weak transcription	HepG2	liver
36	chr14:78024000-78040600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr14:78024000-78046400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr14:78024200-78035600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr14:78024200-78036800	Weak transcription	Brain Angular Gyrus	brain
40	chr14:78024200-78036800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr14:78024200-78041000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr14:78024200-78041800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr14:78024200-78046800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr14:78024200-78047200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr14:78024400-78030600	Strong transcription	Fetal Stomach	stomach
46	chr14:78024400-78031600	Weak transcription	Brain Substantia Nigra	brain
47	chr14:78024400-78031800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr14:78024400-78041600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr14:78024600-78032200	Strong transcription	Primary B cells from peripheral blood	blood
50	chr14:78025000-78035400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links