Variant report

No.	Distal block	Cell Line	Cell type
1	chr14:77954845..77956608-chr14:77958215..77960506,2	MCF-7	breast:
2	chr14:77955188..77957338-chr14:77963090..77964747,2	MCF-7	breast:
3	chr14:77923613..77926004-chr14:77953934..77956082,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151445	Chromatin interaction
ENSG00000100591	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10132095	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10142919	0.90[YRI][hapmap]
rs10873306	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11844239	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1474504	0.91[YRI][hapmap]
rs2091915	0.82[YRI][hapmap]
rs2142186	0.83[YRI][hapmap]
rs2178876	0.90[YRI][hapmap]
rs2364159	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2364160	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899657	0.90[YRI][hapmap]
rs4903598	0.91[YRI][hapmap]
rs4903601	0.91[YRI][hapmap]
rs6574375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574378	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574380	0.83[AMR][1000 genomes]
rs7157218	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157643	0.90[YRI][hapmap]
rs7159082	0.82[AFR][1000 genomes]
rs7401921	0.90[YRI][hapmap]
rs760258	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8003293	0.90[YRI][hapmap]
rs8019754	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs926114	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs963897	0.91[YRI][hapmap]
rs9972134	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77947200-77956200	Strong transcription	HepG2	liver
2	chr14:77949400-77955600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:77950400-77957000	Weak transcription	Fetal Kidney	kidney
4	chr14:77951600-77957000	Weak transcription	Placenta	Placenta
5	chr14:77952000-77955600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:77952400-77957000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:77953400-77964200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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