Variant report

Variant	rs760258
Chromosome Location	chr14:77950123-77950124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77922902..77926049-chr14:77950122..77953496,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100591	Chromatin interaction
ENSG00000151445	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1008669	1.00[MEX][hapmap]
rs10132095	0.84[ASW][hapmap];0.87[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10142919	0.83[ASW][hapmap];0.92[YRI][hapmap]
rs10873306	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11844239	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1474504	0.92[YRI][hapmap]
rs176769	1.00[MEX][hapmap]
rs176782	1.00[MEX][hapmap]
rs2091915	0.85[YRI][hapmap]
rs2142186	0.84[YRI][hapmap]
rs2178876	0.83[ASW][hapmap];0.92[YRI][hapmap]
rs2364158	1.00[MEX][hapmap]
rs2364159	0.83[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2364160	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4145507	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4243655	1.00[MEX][hapmap]
rs4899657	0.83[ASW][hapmap];0.92[YRI][hapmap]
rs4903598	0.91[YRI][hapmap]
rs4903601	0.92[YRI][hapmap]
rs6574375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574378	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574380	0.83[AMR][1000 genomes]
rs7157218	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157643	0.83[ASW][hapmap];0.92[YRI][hapmap]
rs7159082	0.82[AFR][1000 genomes]
rs7401921	0.91[YRI][hapmap]
rs8003293	0.83[ASW][hapmap];0.92[YRI][hapmap]
rs8019754	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs926114	0.92[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs963897	0.92[YRI][hapmap]
rs9972134	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77945000-77951800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:77947200-77956200	Strong transcription	HepG2	liver
3	chr14:77948600-77950400	Enhancers	Fetal Kidney	kidney
4	chr14:77948800-77953400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:77949000-77951600	Strong transcription	Placenta	Placenta
6	chr14:77949400-77952800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:77949400-77955600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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