Variant report

Variant	rs1008669
Chromosome Location	chr14:77901908-77901909
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77901718..77904032-chr14:77922483..77925130,2	MCF-7	breast:
2	chr14:77898431..77900947-chr14:77901863..77904262,2	MCF-7	breast:
3	chr14:77901715..77909086-chr14:77922032..77926412,10	MCF-7	breast:
4	chr14:77889939..77893252-chr14:77901202..77905310,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100591	Chromatin interaction
ENSG00000151445	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10136221	1.00[EUR][1000 genomes]
rs10873305	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105743	1.00[AMR][1000 genomes]
rs176769	0.92[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs176780	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs176782	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2364157	1.00[MKK][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2364158	0.92[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2364159	0.84[ASW][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs4243655	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58378884	1.00[AMR][1000 genomes]
rs61729313	1.00[AMR][1000 genomes]
rs7141931	1.00[EUR][1000 genomes]
rs760258	1.00[MEX][hapmap]
rs8006819	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8022549	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs8135	0.84[ASW][hapmap]
rs926114	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041985	chr14:77877421-77936969	Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1008669	KCTD14	trans	lymphoblastoid	seeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77887000-77919800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:77887000-77920400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr14:77887200-77904200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr14:77887200-77910800	Strong transcription	Primary B cells from cord blood	blood
5	chr14:77887200-77920200	Strong transcription	Placenta	Placenta
6	chr14:77887200-77920600	Strong transcription	Primary T cells from cord blood	blood
7	chr14:77887400-77904200	Strong transcription	Skeletal Muscle Female	skeletal muscle
8	chr14:77887400-77904400	Strong transcription	Adipose Nuclei	Adipose
9	chr14:77887400-77920000	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr14:77887400-77920400	Strong transcription	Liver	Liver
11	chr14:77887600-77904200	Strong transcription	Brain Hippocampus Middle	brain
12	chr14:77887600-77904400	Strong transcription	Fetal Muscle Trunk	muscle
13	chr14:77887600-77904400	Strong transcription	Stomach Smooth Muscle	stomach
14	chr14:77887600-77913000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr14:77887600-77920000	Strong transcription	Fetal Intestine Large	intestine
16	chr14:77887800-77904000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr14:77887800-77904400	Strong transcription	Brain Angular Gyrus	brain
18	chr14:77887800-77920000	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr14:77888000-77904000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr14:77888000-77904200	Strong transcription	Fetal Muscle Leg	muscle
21	chr14:77888000-77904200	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr14:77888000-77920000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:77888200-77903800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr14:77888200-77920400	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr14:77888400-77904400	Strong transcription	Fetal Brain Female	brain
26	chr14:77888400-77920000	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr14:77888600-77903000	Strong transcription	Skeletal Muscle Male	skeletal muscle
28	chr14:77888600-77904200	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr14:77888600-77904400	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr14:77888600-77904400	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr14:77888600-77920000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr14:77888600-77920600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr14:77888800-77902800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:77888800-77903600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr14:77888800-77903800	Strong transcription	Duodenum Mucosa	Duodenum
36	chr14:77888800-77904200	Strong transcription	Dnd41	blood
37	chr14:77888800-77904400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr14:77889000-77904600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr14:77889200-77905000	Strong transcription	Primary B cells from peripheral blood	blood
40	chr14:77889200-77920400	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr14:77889400-77904200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr14:77889600-77920400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr14:77889800-77904600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr14:77890400-77904200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr14:77890600-77904200	Strong transcription	Fetal Lung	lung
46	chr14:77891600-77923200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr14:77892000-77903800	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr14:77893000-77910800	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr14:77893400-77907400	Weak transcription	K562	blood
50	chr14:77893800-77904200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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