Variant report

Variant	rs17105743
Chromosome Location	chr14:77849842-77849843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1008669	1.00[AMR][1000 genomes]
rs10873305	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs176769	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs176780	0.85[AMR][1000 genomes]
rs176782	1.00[AMR][1000 genomes]
rs2364157	1.00[AMR][1000 genomes]
rs2364158	1.00[AMR][1000 genomes]
rs2364159	0.83[AMR][1000 genomes]
rs4243655	1.00[AMR][1000 genomes]
rs58378884	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61729313	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8006819	1.00[AMR][1000 genomes]
rs8020008	0.86[AFR][1000 genomes]
rs8022549	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv902107	chr14:77790416-77871777	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77844400-77855600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:77844400-77862200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr14:77848000-77857200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:77849400-77850200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr14:77849400-77850200	Enhancers	Fetal Intestine Small	intestine
6	chr14:77849800-77850200	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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