Variant report

Variant	rs2364159
Chromosome Location	chr14:77938438-77938439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77935817..77939399-chr14:77941876..77944072,3	MCF-7	breast:
2	chr14:77933031..77935818-chr14:77938168..77941645,3	MCF-7	breast:
3	chr14:77935677..77938460-chr14:78087456..78089168,2	MCF-7	breast:
4	chr14:77933444..77935805-chr14:77937175..77939418,2	MCF-7	breast:
5	chr14:77936196..77939744-chr14:77940216..77943828,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100591	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1008669	0.84[ASW][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs10132095	0.84[LWK][hapmap];1.00[YRI][hapmap]
rs10142919	0.92[YRI][hapmap]
rs10873305	0.83[AMR][1000 genomes]
rs10873306	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11844239	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1474504	0.92[YRI][hapmap]
rs17105743	0.83[AMR][1000 genomes]
rs176769	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs176782	0.84[ASW][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs2091915	0.85[YRI][hapmap]
rs2142186	0.84[YRI][hapmap]
rs2178876	0.92[YRI][hapmap]
rs2364157	0.83[AMR][1000 genomes]
rs2364158	0.92[ASW][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs2364160	1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs4145507	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4243655	0.84[ASW][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs4899657	0.92[YRI][hapmap]
rs4903598	0.91[YRI][hapmap]
rs4903601	0.92[YRI][hapmap]
rs58378884	0.83[AMR][1000 genomes]
rs61729313	0.83[AMR][1000 genomes]
rs6574375	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6574378	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7157218	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7157643	0.92[YRI][hapmap]
rs7401921	0.91[YRI][hapmap]
rs760258	0.83[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8003293	0.92[YRI][hapmap]
rs8006819	0.83[AMR][1000 genomes]
rs8019754	0.83[AMR][1000 genomes]
rs8135	0.84[ASW][hapmap]
rs8177533	1.00[TSI][hapmap]
rs926114	0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs963897	0.92[YRI][hapmap]
rs9972134	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77926000-77939000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:77935800-77938600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr14:77935800-77939000	Weak transcription	HUVEC	blood vessel
4	chr14:77935800-77939200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:77935800-77940400	Weak transcription	NHEK	skin
6	chr14:77936000-77941000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr14:77936000-77944600	Weak transcription	GM12878-XiMat	blood
8	chr14:77936200-77938600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:77936200-77938800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr14:77936200-77938800	Weak transcription	Brain Germinal Matrix	brain
11	chr14:77936200-77939000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:77936200-77939000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:77936200-77939000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:77936200-77939000	Weak transcription	NHLF	lung
15	chr14:77936200-77939200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:77936200-77939200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr14:77936200-77940000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:77936200-77940200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:77936200-77940200	Weak transcription	Osteobl	bone
20	chr14:77936200-77940400	Weak transcription	Fetal Kidney	kidney
21	chr14:77936200-77940800	Weak transcription	Placenta	Placenta
22	chr14:77936200-77941000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr14:77936200-77941000	Weak transcription	Fetal Lung	lung
24	chr14:77936200-77948600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr14:77936400-77938600	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr14:77936400-77938600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr14:77936400-77938600	Weak transcription	Fetal Brain Female	brain
28	chr14:77936400-77938600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr14:77936400-77938600	Weak transcription	Thymus	Thymus
30	chr14:77936400-77938600	Weak transcription	Dnd41	blood
31	chr14:77936400-77939000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr14:77936400-77939000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr14:77936400-77940400	Weak transcription	Adipose Nuclei	Adipose
34	chr14:77936400-77940600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr14:77936400-77940800	Weak transcription	HepG2	liver
36	chr14:77936400-77944800	Weak transcription	Primary B cells from peripheral blood	blood
37	chr14:77936400-77945000	Weak transcription	Gastric	stomach
38	chr14:77936400-77946000	Weak transcription	Brain Angular Gyrus	brain
39	chr14:77936600-77940800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr14:77936600-77947200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr14:77936800-77938800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr14:77936800-77938800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr14:77936800-77939600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr14:77936800-77945000	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr14:77937000-77938600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr14:77937000-77938600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr14:77937000-77938600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr14:77937000-77938600	Weak transcription	Brain Substantia Nigra	brain
49	chr14:77937000-77938600	Weak transcription	Left Ventricle	heart
50	chr14:77937000-77938800	Weak transcription	Ovary	ovary

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