Variant report

Variant	rs2364160
Chromosome Location	chr14:77975015-77975016
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10130138	0.80[AFR][1000 genomes]
rs10132095	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10142919	0.92[YRI][hapmap]
rs10873306	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11844239	1.00[AMR][1000 genomes]
rs1474504	0.93[YRI][hapmap]
rs2091915	0.92[YRI][hapmap]
rs2142186	0.92[YRI][hapmap]
rs2178876	0.92[YRI][hapmap]
rs2364159	1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs4145507	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899657	0.92[YRI][hapmap]
rs4903598	0.92[YRI][hapmap]
rs4903601	0.93[YRI][hapmap]
rs6574375	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574378	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574380	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7157218	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157643	0.92[YRI][hapmap]
rs7159082	0.93[AFR][1000 genomes]
rs7401921	0.92[YRI][hapmap]
rs760258	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8003293	0.92[YRI][hapmap]
rs8019754	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs926114	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs963897	0.93[YRI][hapmap]
rs9972134	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77965600-77977600	Weak transcription	Aorta	Aorta
2	chr14:77966000-77977400	Weak transcription	HMEC	breast
3	chr14:77966400-77976800	Weak transcription	Spleen	Spleen
4	chr14:77966400-77977000	Weak transcription	Pancreas	Pancrea
5	chr14:77966400-77977600	Weak transcription	Gastric	stomach
6	chr14:77966600-77977000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr14:77966600-77977600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:77966600-77977800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:77967200-77978000	Weak transcription	Stomach Mucosa	stomach
10	chr14:77967400-77977000	Weak transcription	NH-A	brain
11	chr14:77968000-77976400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr14:77968200-77977600	Weak transcription	Small Intestine	intestine
13	chr14:77968400-77977600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr14:77968400-77977600	Weak transcription	GM12878-XiMat	blood
15	chr14:77968400-77977800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr14:77968600-77977600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr14:77969000-77975200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr14:77969000-77977000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr14:77969000-77977600	Weak transcription	Thymus	Thymus
20	chr14:77969400-77977000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr14:77969400-77977000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr14:77969400-77977600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr14:77969400-77977800	Weak transcription	NHEK	skin
24	chr14:77969600-77977400	Weak transcription	NHDF-Ad	bronchial
25	chr14:77969600-77977600	Weak transcription	Brain Anterior Caudate	brain
26	chr14:77969600-77977600	Weak transcription	NHLF	lung
27	chr14:77969800-77977600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr14:77970200-77977600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr14:77970200-77977600	Weak transcription	Brain Hippocampus Middle	brain
30	chr14:77970200-77977600	Weak transcription	Colonic Mucosa	Colon
31	chr14:77970200-78047200	Weak transcription	Fetal Heart	heart
32	chr14:77970400-77977800	Weak transcription	Right Ventricle	heart
33	chr14:77970600-77977000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr14:77970600-77977800	Weak transcription	Fetal Kidney	kidney
35	chr14:77970600-77979200	Strong transcription	HSMM	muscle
36	chr14:77970600-77988600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr14:77970800-77977600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr14:77970800-77992600	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr14:77971000-77977600	Weak transcription	Brain Substantia Nigra	brain
40	chr14:77971000-77991400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr14:77971600-77977400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr14:77971600-77977600	Weak transcription	Brain Angular Gyrus	brain
43	chr14:77971600-77991800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr14:77971800-77977600	Weak transcription	Ovary	ovary
45	chr14:77971800-77977600	Weak transcription	K562	blood
46	chr14:77972000-77977200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr14:77972000-77977600	Weak transcription	Fetal Brain Female	brain
48	chr14:77972000-77979000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr14:77972000-78018000	Weak transcription	Hela-S3	cervix
50	chr14:77972200-77975800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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