Variant report

Variant	rs926114
Chromosome Location	chr14:77984573-77984574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77924432..77927894-chr14:77979984..77985197,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100591	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1008669	1.00[MEX][hapmap]
rs10132095	0.92[ASW][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs10142919	0.92[ASW][hapmap];0.92[YRI][hapmap]
rs10873306	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11844239	1.00[AMR][1000 genomes]
rs1474504	0.92[YRI][hapmap]
rs176769	1.00[MEX][hapmap]
rs176782	1.00[MEX][hapmap]
rs2091915	0.83[ASW][hapmap];0.85[YRI][hapmap]
rs2142186	0.84[YRI][hapmap]
rs2178876	0.92[ASW][hapmap];0.92[YRI][hapmap]
rs2364158	1.00[MEX][hapmap]
rs2364159	0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs2364160	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4145507	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4243655	1.00[MEX][hapmap]
rs4899657	0.92[ASW][hapmap];0.92[YRI][hapmap]
rs4903598	0.91[YRI][hapmap]
rs4903601	0.92[YRI][hapmap]
rs6574375	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574378	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574380	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7157218	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157643	0.92[ASW][hapmap];0.92[YRI][hapmap]
rs7159082	0.94[AFR][1000 genomes]
rs7401921	0.91[YRI][hapmap]
rs760258	0.92[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8003293	0.92[ASW][hapmap];0.92[YRI][hapmap]
rs8019754	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs963897	0.92[YRI][hapmap]
rs9972134	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77970200-78047200	Weak transcription	Fetal Heart	heart
2	chr14:77970600-77988600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:77970800-77992600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr14:77971000-77991400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr14:77971600-77991800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr14:77972000-78018000	Weak transcription	Hela-S3	cervix
7	chr14:77972200-77991400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:77972200-77991600	Strong transcription	Primary B cells from cord blood	blood
9	chr14:77972400-77987000	Weak transcription	Psoas Muscle	Psoas
10	chr14:77972600-77991400	Strong transcription	Primary B cells from peripheral blood	blood
11	chr14:77972600-77992000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:77972800-77988200	Strong transcription	Primary T cells from cord blood	blood
13	chr14:77973000-77988600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr14:77973200-77988600	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr14:77974000-77989800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr14:77974600-77985000	Strong transcription	Primary hematopoietic stem cells	blood
17	chr14:77975200-77988400	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr14:77975800-77990000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:77978000-78013400	Weak transcription	NHDF-Ad	bronchial
20	chr14:77978400-77986600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr14:77978400-77992000	Weak transcription	NHLF	lung
22	chr14:77978600-77987600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr14:77978600-77992400	Weak transcription	Fetal Lung	lung
24	chr14:77978600-78014600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr14:77978800-77986000	Weak transcription	Small Intestine	intestine
26	chr14:77978800-77987000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr14:77978800-77989000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr14:77978800-77989400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr14:77978800-77991400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr14:77978800-77992800	Weak transcription	Fetal Brain Female	brain
31	chr14:77978800-78042200	Weak transcription	Fetal Brain Male	brain
32	chr14:77979000-77987000	Weak transcription	Aorta	Aorta
33	chr14:77979000-77987000	Weak transcription	Fetal Kidney	kidney
34	chr14:77979000-77987000	Weak transcription	Right Ventricle	heart
35	chr14:77979000-77987200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr14:77979000-78003800	Weak transcription	K562	blood
37	chr14:77979000-78009400	Weak transcription	Stomach Mucosa	stomach
38	chr14:77979000-78013800	Weak transcription	Pancreas	Pancrea
39	chr14:77979400-77997200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr14:77980000-77988400	Strong transcription	Adipose Nuclei	Adipose
41	chr14:77980400-77988400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr14:77980600-77984600	Strong transcription	HSMM	muscle
43	chr14:77980600-77985400	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr14:77980600-77988400	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr14:77980600-77988600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr14:77980600-77990000	Strong transcription	Duodenum Mucosa	Duodenum
47	chr14:77980600-77990000	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr14:77980800-77987600	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr14:77980800-77988600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr14:77980800-77990000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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