Variant report

Variant	rs10132095
Chromosome Location	chr14:77973982-77973983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10130138	0.80[AFR][1000 genomes]
rs10142919	0.84[ASW][hapmap];0.92[YRI][hapmap]
rs10873306	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs1474504	0.93[YRI][hapmap]
rs2091915	0.85[YRI][hapmap]
rs2142186	0.86[YRI][hapmap]
rs2178876	0.84[ASW][hapmap];0.92[YRI][hapmap]
rs2364159	0.84[LWK][hapmap];1.00[YRI][hapmap]
rs2364160	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs3742739	1.00[CEU][hapmap]
rs4145507	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs4899657	0.84[ASW][hapmap];0.92[YRI][hapmap]
rs4903598	0.92[YRI][hapmap]
rs4903601	0.93[YRI][hapmap]
rs6574375	0.86[AFR][1000 genomes]
rs6574378	0.97[AFR][1000 genomes]
rs6574380	0.86[AFR][1000 genomes]
rs7157218	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7157643	0.84[ASW][hapmap];0.92[YRI][hapmap]
rs7159082	0.93[AFR][1000 genomes]
rs7401921	0.92[YRI][hapmap]
rs760258	0.84[ASW][hapmap];0.87[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs8003293	0.84[ASW][hapmap];0.92[YRI][hapmap]
rs8019754	0.96[AFR][1000 genomes]
rs8177546	1.00[CEU][hapmap]
rs8177560	1.00[CEU][hapmap]
rs8177571	1.00[CEU][hapmap]
rs926114	0.92[ASW][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs963897	0.93[YRI][hapmap]
rs9972134	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3391583	chr14:77973763-77974004	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77965600-77977600	Weak transcription	Aorta	Aorta
2	chr14:77965800-77974600	Weak transcription	A549	lung
3	chr14:77966000-77977400	Weak transcription	HMEC	breast
4	chr14:77966400-77974000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr14:77966400-77976800	Weak transcription	Spleen	Spleen
6	chr14:77966400-77977000	Weak transcription	Pancreas	Pancrea
7	chr14:77966400-77977600	Weak transcription	Gastric	stomach
8	chr14:77966600-77977000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr14:77966600-77977600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:77966600-77977800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:77967000-77974200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr14:77967200-77978000	Weak transcription	Stomach Mucosa	stomach
13	chr14:77967400-77974600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:77967400-77977000	Weak transcription	NH-A	brain
15	chr14:77968000-77976400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr14:77968200-77977600	Weak transcription	Small Intestine	intestine
17	chr14:77968400-77974400	Weak transcription	HUVEC	blood vessel
18	chr14:77968400-77977600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr14:77968400-77977600	Weak transcription	GM12878-XiMat	blood
20	chr14:77968400-77977800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr14:77968600-77977600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr14:77968800-77974400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr14:77969000-77975200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr14:77969000-77977000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr14:77969000-77977600	Weak transcription	Thymus	Thymus
26	chr14:77969400-77974600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr14:77969400-77977000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr14:77969400-77977000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr14:77969400-77977600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr14:77969400-77977800	Weak transcription	NHEK	skin
31	chr14:77969600-77974000	Weak transcription	Fetal Muscle Trunk	muscle
32	chr14:77969600-77977400	Weak transcription	NHDF-Ad	bronchial
33	chr14:77969600-77977600	Weak transcription	Brain Anterior Caudate	brain
34	chr14:77969600-77977600	Weak transcription	NHLF	lung
35	chr14:77969800-77974400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr14:77969800-77974600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr14:77969800-77977600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr14:77970000-77975000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr14:77970200-77974000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr14:77970200-77977600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr14:77970200-77977600	Weak transcription	Brain Hippocampus Middle	brain
42	chr14:77970200-77977600	Weak transcription	Colonic Mucosa	Colon
43	chr14:77970200-78047200	Weak transcription	Fetal Heart	heart
44	chr14:77970400-77974400	Weak transcription	Brain Germinal Matrix	brain
45	chr14:77970400-77974400	Weak transcription	Fetal Lung	lung
46	chr14:77970400-77977800	Weak transcription	Right Ventricle	heart
47	chr14:77970600-77974200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr14:77970600-77974400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr14:77970600-77974400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr14:77970600-77975000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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