Variant report

Variant	rs6574375
Chromosome Location	chr14:77957512-77957513
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10132095	0.86[AFR][1000 genomes]
rs10873306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11844239	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2364159	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2364160	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4145507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574378	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574380	0.83[AMR][1000 genomes]
rs7157218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7159082	0.82[AFR][1000 genomes]
rs760258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8019754	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs926114	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77953400-77964200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:77956800-77957600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:77957000-77957600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:77957000-77958800	Enhancers	Placenta	Placenta
5	chr14:77957200-77957600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:77957400-77963200	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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