Variant report

Variant	rs6574378
Chromosome Location	chr14:77971217-77971218
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1008669	1.00[MEX][hapmap]
rs10130138	0.82[AFR][1000 genomes]
rs10132095	0.92[ASW][hapmap];0.90[LWK][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs10142919	0.92[ASW][hapmap];0.92[YRI][hapmap]
rs10873306	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11844239	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1474504	0.92[YRI][hapmap]
rs176769	1.00[MEX][hapmap]
rs176782	1.00[MEX][hapmap]
rs2091915	0.83[ASW][hapmap];0.85[YRI][hapmap]
rs2142186	0.84[YRI][hapmap]
rs2178876	0.92[ASW][hapmap];0.92[YRI][hapmap]
rs2364158	1.00[MEX][hapmap]
rs2364159	0.93[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2364160	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4145507	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4243655	1.00[MEX][hapmap]
rs4899657	0.92[ASW][hapmap];0.92[YRI][hapmap]
rs4903598	0.91[YRI][hapmap]
rs4903601	0.92[YRI][hapmap]
rs6574375	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574380	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7157218	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157643	0.92[ASW][hapmap];0.92[YRI][hapmap]
rs7159082	0.93[AFR][1000 genomes]
rs7401921	0.91[YRI][hapmap]
rs760258	0.92[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8003293	0.92[ASW][hapmap];0.92[YRI][hapmap]
rs8019754	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs926114	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs963897	0.92[YRI][hapmap]
rs9972134	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77965600-77977600	Weak transcription	Aorta	Aorta
2	chr14:77965800-77974600	Weak transcription	A549	lung
3	chr14:77966000-77973400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr14:77966000-77977400	Weak transcription	HMEC	breast
5	chr14:77966400-77972800	Weak transcription	Esophagus	oesophagus
6	chr14:77966400-77974000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr14:77966400-77976800	Weak transcription	Spleen	Spleen
8	chr14:77966400-77977000	Weak transcription	Pancreas	Pancrea
9	chr14:77966400-77977600	Weak transcription	Gastric	stomach
10	chr14:77966600-77977000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:77966600-77977600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:77966600-77977800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:77966800-77972600	Weak transcription	Osteobl	bone
14	chr14:77966800-77972800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:77966800-77973200	Weak transcription	Placenta	Placenta
16	chr14:77967000-77974200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr14:77967200-77971600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr14:77967200-77972600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr14:77967200-77978000	Weak transcription	Stomach Mucosa	stomach
20	chr14:77967400-77974600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr14:77967400-77977000	Weak transcription	NH-A	brain
22	chr14:77967600-77972200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr14:77967600-77972600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr14:77967600-77972600	Weak transcription	HSMMtube	muscle
25	chr14:77967800-77972800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr14:77968000-77976400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr14:77968200-77972800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr14:77968200-77972800	Weak transcription	Fetal Thymus	thymus
29	chr14:77968200-77972800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr14:77968200-77977600	Weak transcription	Small Intestine	intestine
31	chr14:77968400-77974400	Weak transcription	HUVEC	blood vessel
32	chr14:77968400-77977600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr14:77968400-77977600	Weak transcription	GM12878-XiMat	blood
34	chr14:77968400-77977800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr14:77968600-77977600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr14:77968800-77972200	Weak transcription	Primary B cells from cord blood	blood
37	chr14:77968800-77974400	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr14:77969000-77972800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr14:77969000-77973000	Weak transcription	Fetal Stomach	stomach
40	chr14:77969000-77975200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr14:77969000-77977000	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr14:77969000-77977600	Weak transcription	Thymus	Thymus
43	chr14:77969400-77972600	Weak transcription	Duodenum Mucosa	Duodenum
44	chr14:77969400-77974600	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr14:77969400-77977000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr14:77969400-77977000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr14:77969400-77977600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr14:77969400-77977800	Weak transcription	NHEK	skin
49	chr14:77969600-77972600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr14:77969600-77972600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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