Variant report

Variant	rs176780
Chromosome Location	chr14:77886081-77886082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1008669	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10873305	0.85[AMR][1000 genomes]
rs17105743	0.85[AMR][1000 genomes]
rs176769	0.85[AMR][1000 genomes]
rs176782	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2364157	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2364158	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4243655	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58378884	0.85[AMR][1000 genomes]
rs61729313	0.85[AMR][1000 genomes]
rs8006819	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1362	chr14:77853202-77898605	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1041985	chr14:77877421-77936969	Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77859600-77886200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:77872400-77888600	Weak transcription	Pancreas	Pancrea
3	chr14:77880400-77894400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:77881800-77888200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:77882400-77888000	Weak transcription	HSMM	muscle
6	chr14:77883800-77893200	Weak transcription	K562	blood
7	chr14:77884800-77891000	Weak transcription	HMEC	breast
8	chr14:77885000-77887400	Weak transcription	Esophagus	oesophagus
9	chr14:77885200-77888000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:77885200-77888000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:77885400-77887200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:77885600-77888000	Weak transcription	Fetal Kidney	kidney
13	chr14:77886000-77886400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr14:77886000-77887000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
15	chr14:77886000-77887200	ZNF genes & repeats	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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