Variant report

Variant	rs9262556
Chromosome Location	chr6:31005713-31005714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs9262552	0.94[AMR][1000 genomes]
rs9262557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9262558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9262559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9262560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9262561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9262562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9262570	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31003400-31006200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:31003600-31005800	Enhancers	Hela-S3	cervix
3	chr6:31003800-31005800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:31004000-31005800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr6:31004000-31006000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:31004400-31006000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:31004400-31006000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:31004400-31006000	Enhancers	Pancreas	Pancrea
9	chr6:31004400-31007800	Enhancers	Stomach Mucosa	stomach
10	chr6:31004400-31010800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:31004800-31006000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:31004800-31006000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:31004800-31006000	Enhancers	Lung	lung
14	chr6:31004800-31006000	Flanking Active TSS	NHDF-Ad	bronchial
15	chr6:31004800-31007600	Enhancers	Gastric	stomach
16	chr6:31005000-31005800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr6:31005000-31005800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:31005000-31005800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:31005000-31006000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr6:31005200-31005800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:31005200-31005800	Weak transcription	Right Atrium	heart
22	chr6:31005200-31006000	Enhancers	Brain Angular Gyrus	brain
23	chr6:31005200-31006000	Enhancers	Brain Anterior Caudate	brain
24	chr6:31005200-31006000	Enhancers	HMEC	breast
25	chr6:31005200-31006000	Enhancers	NH-A	brain
26	chr6:31005400-31006200	Enhancers	HSMM	muscle
27	chr6:31005400-31006200	Enhancers	HSMMtube	muscle
28	chr6:31005600-31005800	Bivalent Enhancer	NHLF	lung
29	chr6:31005600-31006000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
30	chr6:31005600-31006000	Enhancers	Osteobl	bone
31	chr6:31005600-31006200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr6:31005600-31006200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr6:31005600-31006400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:31005600-31006800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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