Variant report

Variant	rs9262570
Chromosome Location	chr6:31012485-31012486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:31007765..31010643-chr6:31011051..31014483,3	K562	blood:
2	chr6:30883355..30884929-chr6:31011755..31013954,2	K562	blood:
3	chr6:30930448..30932283-chr6:31010953..31013898,2	K562	blood:
4	chr6:30890075..30890825-chr6:31011864..31012700,2	MCF-7	breast:
5	chr6:30880584..30886230-chr6:31009556..31012955,9	MCF-7	breast:
6	chr6:31010707..31012864-chr6:31028593..31030504,2	MCF-7	breast:
7	chr6:30883032..30883759-chr6:31011810..31012818,4	MCF-7	breast:
8	chr6:31010735..31013571-chr6:31016470..31018721,2	MCF-7	breast:
9	chr6:30910200..30910854-chr6:31011855..31012608,2	MCF-7	breast:
10	chr6:31010860..31013816-chr6:31025922..31027807,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137411	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs2523868	1.00[ASN][1000 genomes]
rs62399060	1.00[ASN][1000 genomes]
rs62399061	1.00[ASN][1000 genomes]
rs62399065	0.86[ASN][1000 genomes]
rs62399066	0.86[ASN][1000 genomes]
rs62401699	1.00[ASN][1000 genomes]
rs62401700	0.93[ASN][1000 genomes]
rs6928038	0.90[ASN][1000 genomes]
rs72502536	0.90[ASN][1000 genomes]
rs72502537	0.90[ASN][1000 genomes]
rs72502538	0.90[ASN][1000 genomes]
rs72502540	0.90[ASN][1000 genomes]
rs9262552	0.81[AMR][1000 genomes]
rs9262556	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9262557	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9262558	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9262559	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9262560	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9262561	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9262562	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9262643	0.86[AMR][1000 genomes]
rs9262644	0.86[AMR][1000 genomes]
rs9262652	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
6	nsv1029442	chr6:31006647-31449207	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
7	esv3489797	chr6:31012377-31013068	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3489798	chr6:31012377-31013068	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31006000-31014800	Weak transcription	Right Atrium	heart
2	chr6:31009600-31027400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:31010200-31015800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:31010600-31021600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:31011000-31014400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:31011000-31015800	Weak transcription	Hela-S3	cervix

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