Variant report

Variant	rs926480
Chromosome Location	chr20:41279219-41279220
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:115296501..115298139-chr20:41277950..41280016,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs16987202	0.81[EUR][1000 genomes]
rs16987229	0.82[JPT][hapmap];0.83[LWK][hapmap];0.92[TSI][hapmap];0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs16987276	0.82[JPT][hapmap];0.86[TSI][hapmap]
rs2425502	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2425528	0.82[JPT][hapmap]
rs2425530	0.82[JPT][hapmap]
rs3092596	0.82[JPT][hapmap]
rs4140493	0.81[EUR][1000 genomes]
rs4560192	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs4810370	0.92[TSI][hapmap]
rs4812618	0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs4812633	0.82[JPT][hapmap]
rs4812637	0.92[TSI][hapmap]
rs6030404	0.81[EUR][1000 genomes]
rs6030405	0.82[JPT][hapmap]
rs6030407	0.86[TSI][hapmap]
rs6030409	0.81[EUR][1000 genomes]
rs6030410	0.82[JPT][hapmap];0.92[TSI][hapmap]
rs6030432	0.82[JPT][hapmap]
rs6030433	0.82[JPT][hapmap];0.92[TSI][hapmap]
rs6030434	0.82[JPT][hapmap]
rs6030435	0.92[TSI][hapmap]
rs6093706	0.80[YRI][hapmap]
rs6102978	0.82[JPT][hapmap];0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs6102979	0.82[JPT][hapmap];0.90[YRI][hapmap];0.81[EUR][1000 genomes]
rs6102986	0.81[EUR][1000 genomes]
rs6102987	0.82[JPT][hapmap];0.81[YRI][hapmap]
rs6102990	0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs6102994	0.82[JPT][hapmap];0.81[YRI][hapmap]
rs6102997	0.82[JPT][hapmap]
rs6103000	0.82[JPT][hapmap]
rs6103005	0.82[JPT][hapmap]
rs6103008	0.82[JPT][hapmap]
rs6103012	0.86[TSI][hapmap]
rs7362290	0.81[EUR][1000 genomes]
rs8115740	0.81[EUR][1000 genomes]
rs8120378	0.82[JPT][hapmap]
rs970283	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs976248	0.92[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064253	chr20:41120425-41379706	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv586006	chr20:41157707-41290936	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1063513	chr20:41171076-41303205	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv912876	chr20:41174693-41296994	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv915994	chr20:41180550-41464507	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv526415	chr20:41184009-41290936	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1063974	chr20:41185138-41292788	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv586018	chr20:41188318-41297693	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv532517	chr20:41188651-41342196	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv528161	chr20:41202935-41297693	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv949644	chr20:41207365-41333541	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv912878	chr20:41222480-41361424	Strong transcription Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv1067538	chr20:41225020-41284395	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1055687	chr20:41227592-41284395	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv833988	chr20:41227788-41379921	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv458980	chr20:41228738-41284782	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv586022	chr20:41228738-41284782	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv586023	chr20:41228738-41297693	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv912879	chr20:41229217-41285978	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv432122	chr20:41230786-41281086	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv912880	chr20:41238504-41296994	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv458981	chr20:41240700-41290936	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv586024	chr20:41240700-41290936	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	nsv912881	chr20:41240700-41296994	Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	nsv912882	chr20:41240700-41296994	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	nsv1057771	chr20:41241208-41287845	Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	nsv912885	chr20:41243236-41284395	Enhancers Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	nsv912886	chr20:41243236-41296994	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	nsv912887	chr20:41243236-41296994	Enhancers Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
30	nsv912888	chr20:41243236-41302843	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
31	esv2754684	chr20:41253081-41281104	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv2760672	chr20:41253498-41279219	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv432126	chr20:41255613-41282426	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv586026	chr20:41261444-41297693	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
35	esv2830283	chr20:41266942-41290936	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv470552	chr20:41269321-41297693	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv458982	chr20:41269321-41302843	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
38	nsv586027	chr20:41269321-41302843	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
39	nsv522445	chr20:41273663-41280315	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41271600-41300800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:41278600-41279400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr20:41278800-41279400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr20:41279000-41279400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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