Variant report

Variant	rs6103012
Chromosome Location	chr20:41350758-41350759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11905283	0.92[EUR][1000 genomes]
rs16987202	0.87[EUR][1000 genomes]
rs16987229	1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs16987276	1.00[CHB][hapmap];0.82[CHD][hapmap];0.90[GIH][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2206430	0.85[EUR][1000 genomes]
rs2425528	0.82[GIH][hapmap]
rs2425530	0.82[GIH][hapmap]
rs4140493	0.87[EUR][1000 genomes]
rs4560192	0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs4810370	1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs4812615	0.89[EUR][1000 genomes]
rs4812617	0.87[EUR][1000 genomes]
rs4812618	1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs4812633	1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4812635	0.91[EUR][1000 genomes]
rs4812637	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4812638	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs59581792	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6030404	0.87[EUR][1000 genomes]
rs6030405	1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs6030407	0.81[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs6030409	0.87[EUR][1000 genomes]
rs6030410	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs6030432	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6030433	0.81[ASW][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6030434	0.86[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6030435	0.91[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs60886646	0.89[EUR][1000 genomes]
rs6093718	0.91[EUR][1000 genomes]
rs6093719	0.89[EUR][1000 genomes]
rs6102978	1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs6102979	1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs6102986	0.87[EUR][1000 genomes]
rs6102987	1.00[CHB][hapmap]
rs6102990	1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs6102993	0.89[EUR][1000 genomes]
rs6102994	1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs6102995	0.89[EUR][1000 genomes]
rs6102997	1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs6103000	1.00[CHB][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6103005	1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6103008	1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7362290	0.87[EUR][1000 genomes]
rs742419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8115740	0.87[EUR][1000 genomes]
rs8120378	0.86[CHB][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs926480	0.86[TSI][hapmap]
rs970283	0.86[TSI][hapmap]
rs976248	0.86[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs976249	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064253	chr20:41120425-41379706	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915994	chr20:41180550-41464507	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv912878	chr20:41222480-41361424	Strong transcription Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv833988	chr20:41227788-41379921	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1058990	chr20:41289969-41543912	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv544277	chr20:41289969-41543912	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv586028	chr20:41296994-41381215	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2762075	chr20:41342302-41365700	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv962546	chr20:41349411-41355479	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41350600-41351000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links