Variant report

Variant	rs9278004
Chromosome Location	chr6:33319815-33319816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11759285	0.84[EUR][1000 genomes]
rs1705003	0.82[EUR][1000 genomes]
rs9277997	0.82[EUR][1000 genomes]
rs9278001	0.83[EUR][1000 genomes]
rs9278005	0.83[EUR][1000 genomes]
rs9278006	0.83[EUR][1000 genomes]
rs9278007	0.83[EUR][1000 genomes]
rs9278015	0.83[EUR][1000 genomes]
rs9278016	0.83[EUR][1000 genomes]
rs9278019	0.83[EUR][1000 genomes]
rs9278028	0.82[EUR][1000 genomes]
rs9278034	0.82[EUR][1000 genomes]
rs9278036	0.82[EUR][1000 genomes]
rs9278039	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
3	nsv969386	chr6:33297665-33325116	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33313800-33322000	Weak transcription	Primary T cells from cord blood	blood
2	chr6:33317800-33320000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:33317800-33323000	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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