Variant report

Variant	rs9278039
Chromosome Location	chr6:33355103-33355104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1106606	0.80[EUR][1000 genomes]
rs11751696	0.83[EUR][1000 genomes]
rs11753355	0.83[EUR][1000 genomes]
rs11756267	0.83[EUR][1000 genomes]
rs11756767	0.83[EUR][1000 genomes]
rs11759285	0.90[EUR][1000 genomes]
rs1705003	0.89[EUR][1000 genomes]
rs2235982	0.85[EUR][1000 genomes]
rs41267647	0.85[EUR][1000 genomes]
rs41271245	0.83[EUR][1000 genomes]
rs4231	0.85[EUR][1000 genomes]
rs55699469	0.83[EUR][1000 genomes]
rs61687548	0.94[AFR][1000 genomes]
rs9277997	0.82[EUR][1000 genomes]
rs9278001	0.83[EUR][1000 genomes]
rs9278004	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9278005	0.83[EUR][1000 genomes]
rs9278006	0.83[EUR][1000 genomes]
rs9278007	0.83[EUR][1000 genomes]
rs9278015	0.83[EUR][1000 genomes]
rs9278016	0.83[EUR][1000 genomes]
rs9278019	0.83[EUR][1000 genomes]
rs9278027	0.82[EUR][1000 genomes]
rs9278028	0.85[EUR][1000 genomes]
rs9278034	0.85[EUR][1000 genomes]
rs9278036	0.85[EUR][1000 genomes]
rs9278038	0.87[EUR][1000 genomes]
rs9278040	0.87[EUR][1000 genomes]
rs9278043	0.85[EUR][1000 genomes]
rs9278044	0.85[EUR][1000 genomes]
rs9278045	0.82[EUR][1000 genomes]
rs9278046	0.85[EUR][1000 genomes]
rs9278049	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
2	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33341200-33358600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:33343800-33359200	Weak transcription	Right Atrium	heart
3	chr6:33345600-33358800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:33348400-33358800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:33351800-33358600	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:33352600-33358800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:33352800-33358200	Weak transcription	K562	blood
8	chr6:33352800-33358400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:33352800-33358400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:33352800-33358400	Weak transcription	Hela-S3	cervix
11	chr6:33352800-33358400	Weak transcription	HepG2	liver
12	chr6:33352800-33358800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:33352800-33358800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:33352800-33358800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:33352800-33358800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:33353200-33358400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:33354800-33358600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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