Variant report

Variant	rs9289815
Chromosome Location	chr3:150229958-150229959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4277712	0.85[EUR][1000 genomes]
rs6414376	1.00[CEU][hapmap]
rs6777126	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7620193	1.00[MEX][hapmap]
rs7621019	1.00[MEX][hapmap]
rs8180104	1.00[GIH][hapmap];0.80[LWK][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs9289816	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9836058	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9865803	0.87[ASW][hapmap];0.90[LWK][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9289815	EIF2A	cis	Artery Tibial	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150214000-150233200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:150228600-150231400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:150229000-150231400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:150229600-150230200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:150229600-150230600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:150229600-150230600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:150229600-150230800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:150229600-150235200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:150229800-150230800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:150229800-150230800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:150229800-150230800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links