Variant report

Variant	rs9836058
Chromosome Location	chr3:150236361-150236362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4277712	0.89[EUR][1000 genomes]
rs6414376	1.00[CEU][hapmap]
rs6777126	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8180104	0.90[EUR][1000 genomes]
rs9289815	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9289816	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9865803	1.00[YRI][hapmap];0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9836058	EIF2A	cis	Artery Tibial	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150233600-150236400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:150235400-150256600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:150236000-150236600	Enhancers	Fetal Heart	heart
4	chr3:150236000-150236600	Enhancers	Hela-S3	cervix
5	chr3:150236200-150237000	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr3:150236200-150237600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr3:150236200-150237600	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links