Variant report

Variant	rs929295
Chromosome Location	chr7:122020759-122020760
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:122018270..122021183-chr7:122022802..122025299,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12538303	0.83[TSI][hapmap]
rs17463319	0.80[GIH][hapmap];0.83[TSI][hapmap]
rs62474594	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62474596	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7778318	0.85[TSI][hapmap]
rs7785641	0.83[TSI][hapmap]
rs7803157	0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:121998200-122025600	Weak transcription	Fetal Lung	lung
3	chr7:122003200-122061000	Weak transcription	Aorta	Aorta
4	chr7:122007400-122073000	Weak transcription	Lung	lung
5	chr7:122010400-122024000	Weak transcription	Ovary	ovary
6	chr7:122013800-122081800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr7:122017400-122055200	Weak transcription	Liver	Liver
8	chr7:122018200-122021600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:122018200-122021800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:122018800-122021400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:122018800-122021600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:122019000-122021200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:122019000-122021600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:122019200-122023200	Weak transcription	Left Ventricle	heart
15	chr7:122019200-122033200	Weak transcription	Pancreas	Pancrea
16	chr7:122019600-122021800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:122019800-122020800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:122019800-122021200	Enhancers	Brain Germinal Matrix	brain
19	chr7:122019800-122021400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr7:122019800-122021400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr7:122019800-122021600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:122019800-122021600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr7:122019800-122026400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr7:122020400-122020800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr7:122020400-122021200	Enhancers	Fetal Heart	heart
26	chr7:122020400-122021400	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr7:122020600-122021600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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