Variant report

Variant	rs12538303
Chromosome Location	chr7:122004114-122004115
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10247904	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773233	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536083	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1443754	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17369598	1.00[ASN][1000 genomes]
rs17462732	0.95[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17463319	0.90[GIH][hapmap]
rs56346012	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62473066	1.00[ASN][1000 genomes]
rs62474590	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62474591	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62474592	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6943903	1.00[ASN][1000 genomes]
rs702419	0.90[CEU][hapmap];1.00[ASN][1000 genomes]
rs702420	0.90[CEU][hapmap];1.00[ASN][1000 genomes]
rs73214169	1.00[ASN][1000 genomes]
rs73216104	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778318	0.95[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785641	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794283	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs7801104	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.94[LWK][hapmap];0.98[MKK][hapmap];0.89[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803157	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7804733	0.90[CEU][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs798680	0.90[CEU][hapmap];1.00[ASN][1000 genomes]
rs798682	0.90[CEU][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];1.00[ASN][1000 genomes]
rs798684	0.90[CEU][hapmap];1.00[ASN][1000 genomes]
rs798685	0.90[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs929295	0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:121980800-122018600	Weak transcription	Left Ventricle	heart
3	chr7:121998200-122025600	Weak transcription	Fetal Lung	lung
4	chr7:122000600-122004600	Weak transcription	Spleen	Spleen
5	chr7:122002600-122005000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:122002600-122005200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:122003200-122061000	Weak transcription	Aorta	Aorta
8	chr7:122003400-122005000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:122003600-122005200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:122003600-122012200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:122003600-122013200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:122003800-122005000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:122003800-122009600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:122004000-122005000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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